DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and RAB40AL

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_001027004.1 Gene:RAB40AL / 282808 HGNCID:25410 Length:278 Species:Homo sapiens


Alignment Length:168 Identity:75/168 - (44%)
Similarity:105/168 - (62%) Gaps:1/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQ 68
            :.||.|.|.||:||..|||:.||....|....|.:....|||:|..|:.|.|:::||::|||:||
Human     9 QAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQ 73

  Fly    69 ERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVN 133
            .||.||..||.|||.|::|||||.|..|||.:.:|::.|:||| ..|.|:::||:..:..||.|.
Human    74 GRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVP 137

  Fly   134 KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAIL 171
            :|:.:|.|...|:.|.|.|...|.||..:|.|||..:|
Human   138 REQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 74/165 (45%)
RAB40ALNP_001027004.1 P-loop_NTPase 9..278 CDD:328724 75/168 (45%)
SOCS_Rab40 187..228 CDD:239711
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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