DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and rab-10

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_491857.1 Gene:rab-10 / 266836 WormBaseID:WBGene00004273 Length:201 Species:Caenorhabditis elegans


Alignment Length:203 Identity:146/203 - (71%)
Similarity:172/203 - (84%) Gaps:2/203 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDT 65
            ||::.||:||||||||||||||||||:|||||||.:||||||||||||||:||:|||||||||||
 Worm     1 MARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDT 65

  Fly    66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKR 130
            ||||||||||||||||||||||||||||.|||:||.||||||||||:|||.||||||||||:|:|
 Worm    66 AGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNKCDMSDRR 130

  Fly   131 VVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEK 195
            ||::||||.||::|||.|.|||||.|::::.||.:||||||.|..  :|.:.|.|..::....::
 Worm   131 VVSRERGEKIAQDHGISFHETSAKLNVHVDTAFYDLAEAILAKMP--DSTDEQSRDTVNPVQPQR 193

  Fly   196 APGYSKCC 203
            ......||
 Worm   194 QSSSGGCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 137/165 (83%)
rab-10NP_491857.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 137/165 (83%)
RAB 10..173 CDD:197555 135/162 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164609
Domainoid 1 1.000 279 1.000 Domainoid score I901
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41111
Inparanoid 1 1.050 299 1.000 Inparanoid score I1641
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1426655at2759
OrthoFinder 1 1.000 - - FOG0000502
OrthoInspector 1 1.000 - - oto17373
orthoMCL 1 0.900 - - OOG6_107709
Panther 1 1.100 - - LDO PTHR47980
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1998
SonicParanoid 1 1.000 - - X312
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.830

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