DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and ypt2

DIOPT Version :9

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_594580.1 Gene:ypt2 / 2543280 PomBaseID:SPAC9E9.07c Length:200 Species:Schizosaccharomyces pombe


Alignment Length:203 Identity:112/203 - (55%)
Similarity:157/203 - (77%) Gaps:3/203 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDT 65
            |:.|:||.|.||||||||||||:|:|.|||:|:||.:||:||||||||:|:||.||:||||||||
pombe     1 MSTKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

  Fly    66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKR 130
            ||||||.||||:||||||||:|:||:|::|||:|:..|..|:::||:|:|.|:::|||||..|:|
pombe    66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130

  Fly   131 VVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEK 195
            .|:.|:|:|:|.|.|::|:|.|||:|:|::.||..||..|..:....|:..:.:...:|..|...
pombe   131 QVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVDLGNDRT 195

  Fly   196 APGYSKCC 203
            .   .:||
pombe   196 V---KRCC 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 104/165 (63%)
ypt2NP_594580.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 104/165 (63%)
Ras 11..172 CDD:278499 102/160 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 240 1.000 Domainoid score I454
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I767
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000502
OrthoInspector 1 1.000 - - otm47008
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1998
SonicParanoid 1 1.000 - - X312
TreeFam 1 0.960 - -
109.850

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