DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab10 and RAB40A

DIOPT Version :10

Sequence 1:NP_523419.1 Gene:Rab10 / 33025 FlyBaseID:FBgn0015789 Length:204 Species:Drosophila melanogaster
Sequence 2:NP_543155.2 Gene:RAB40A / 142684 HGNCID:18283 Length:277 Species:Homo sapiens


Alignment Length:168 Identity:76/168 - (45%)
Similarity:106/168 - (63%) Gaps:1/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQ 68
            :.||.|.|.||:||..|||:.||....|.|..|.:....|||:|..|:.|.|:::||::|||:||
Human     9 QAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQ 73

  Fly    69 ERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVN 133
            .||.||..||.|||.|::|||||.|..|||.:.:|::.|:||| ..|.|:::||:..:..||.|.
Human    74 GRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVP 137

  Fly   134 KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAIL 171
            :|:.:|.|...|:.|.|.|...|.||..:|.|||..:|
Human   138 REQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab10NP_523419.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 75/165 (45%)
RAB40ANP_543155.2 P-loop containing Nucleoside Triphosphate Hydrolases 9..277 CDD:476819 76/168 (45%)
Switch-I. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 41..49 1/7 (14%)
Switch-II. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 72..88 10/15 (67%)
SOCS_Rab40 187..228 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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