DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab35 and rab18b

DIOPT Version :10

Sequence 1:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001003449.1 Gene:rab18b / 445055 ZFINID:ZDB-GENE-040801-185 Length:205 Species:Danio rerio


Alignment Length:204 Identity:93/204 - (45%)
Similarity:127/204 - (62%) Gaps:25/204 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTIT 74
            |:||||:|||||||||:||:||||......|||||||::|:.|:|.|.||.||||||||||||:|
Zfish    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLT 74

  Fly    75 STYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNC---DVVKKVLVGNKNDDPDRKVVITEDAQ 136
            .:||||..|||:|||||..::|..:..||.|::..|   |:| |:|||||.|..:|:|...| ..
Zfish    75 PSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLV-KMLVGNKIDKDNREVDRNE-GL 137

  Fly   137 RFAKQMDIELFETSAKDNINVENMFLSITRQVL-----------DHKLRTSPNEQQKDTLHLKPN 190
            :||::..:...|.|||....|:..|..:..::|           :|.::.|.||.|:        
Zfish   138 KFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQLSDNEPQR-------- 194

  Fly   191 PKGSKGGKC 199
             :|:.||.|
Zfish   195 -QGACGGYC 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_608373.1 Rab35 3..201 CDD:133310 93/204 (46%)
rab18bNP_001003449.1 Rab18 9..169 CDD:206656 83/160 (52%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 7/13 (54%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 13/16 (81%)

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