DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab35 and rab1ba

DIOPT Version :10

Sequence 1:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_957436.1 Gene:rab1ba / 394117 ZFINID:ZDB-GENE-040426-873 Length:201 Species:Danio rerio


Alignment Length:200 Identity:109/200 - (54%)
Similarity:142/200 - (71%) Gaps:7/200 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQER 69
            :|:|||||:|||||||||.||:||:|||::.|||:||||||||||::::|..:||||||||||||
Zfish     5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69

  Fly    70 FRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNC-DVVKKVLVGNKNDDPDRKVVITE 133
            ||||||:||||.||:|||||||:.||:.||::||:||.... :.|.|:|||||.|...:|||...
Zfish    70 FRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 134

  Fly   134 DAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPNEQ---QKDTLHLKPNPKGSK 195
            .|:.||..:.|...|||||:..|||..|:::..::   |.|..|...   .|..|.::..|....
Zfish   135 TAKEFADSLAIPFLETSAKNATNVEQAFMTMAAEI---KKRMGPGATTGGDKPNLKIESTPVRQS 196

  Fly   196 GGKCC 200
            ||.||
Zfish   197 GGGCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_608373.1 Rab35 3..201 CDD:133310 108/199 (54%)
rab1baNP_957436.1 Rab1_Ypt1 7..172 CDD:206661 99/167 (59%)

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