DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab35 and rab5ab

DIOPT Version :10

Sequence 1:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_957264.1 Gene:rab5ab / 393945 ZFINID:ZDB-GENE-040122-3 Length:216 Species:Danio rerio


Alignment Length:209 Identity:74/209 - (35%)
Similarity:113/209 - (54%) Gaps:33/209 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTI 73
            |||:::|:|.||||||::||....|.....:|||..|..:|:.::...||.:|||||||||:.::
Zfish    22 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSL 86

  Fly    74 TSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDV-VKKVLVGNKNDDPDRKVVITEDAQR 137
            ...||||....|||||:||.||||..:.|::|:|..... :...|.|||.|..:::.:..:|||.
Zfish    87 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALAGNKADLANKRALDFQDAQS 151

  Fly   138 FAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKG-----SKG- 196
            :|....:...|||||.::||..:|::|.:::        |..:        |.|.|     ::| 
Zfish   152 YADDNSLLFMETSAKTSMNVSEIFMAIAKKL--------PKNE--------PQPAGANTARNRGV 200

  Fly   197 ----------GKCC 200
                      |.||
Zfish   201 DLTETAQPAKGPCC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_608373.1 Rab35 3..201 CDD:133310 74/209 (35%)
rab5abNP_957264.1 Rab5_related 21..183 CDD:206653 66/168 (39%)

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