DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab35 and rab1ab

DIOPT Version :10

Sequence 1:NP_608373.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001007162.1 Gene:rab1ab / 368883 ZFINID:ZDB-GENE-030616-564 Length:201 Species:Danio rerio


Alignment Length:200 Identity:108/200 - (54%)
Similarity:142/200 - (71%) Gaps:7/200 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQER 69
            :|:|||||:|||||||||.||:||:|||::.|||:||||||||||::::|..:||||||||||||
Zfish     5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69

  Fly    70 FRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNC-DVVKKVLVGNKNDDPDRKVVITE 133
            ||||||:||||.||:|||||||:.|||.||::||:||.... :.|.|:|||||.|...:|||...
Zfish    70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 134

  Fly   134 DAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPNEQ---QKDTLHLKPNPKGSK 195
            .|:.||..:.|...|||||:..|||..|:::..::   |.|..|...   .:.|:.::..|....
Zfish   135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI---KKRMGPGATAGGSEKTMKIESTPVKPA 196

  Fly   196 GGKCC 200
            .|.||
Zfish   197 SGGCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_608373.1 Rab35 3..201 CDD:133310 107/199 (54%)
rab1abNP_001007162.1 Rab1_Ypt1 7..172 CDD:206661 100/167 (60%)

Return to query results.
Submit another query.