DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab35 and Rab2

DIOPT Version :9

Sequence 1:NP_001188678.1 Gene:Rab35 / 33014 FlyBaseID:FBgn0031090 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001260732.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster


Alignment Length:212 Identity:81/212 - (38%)
Similarity:126/212 - (59%) Gaps:17/212 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQER 69
            :.:|||.:||||:|||||.||::|:|..|...:..||||:|..|.:.|:|.::|||||||||||.
  Fly     3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEA 67

  Fly    70 FRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQ--NNCDVVKKVLVGNKNDDPDRKVVIT 132
            ||:||.:||||..|.::|||:|..|:|.::..|||:.:  :|.::| .:|:|||:|...|:.|..
  Fly    68 FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLDSRREVKK 131

  Fly   133 EDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLD------HKLRTSPNEQQKDTLHLKPNP 191
            |:.:.||::..:...||||:...|||..|::..:::.:      ..:....|..:....|...||
  Fly   132 EEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTNP 196

  Fly   192 K--------GSKGGKCC 200
            .        |:....||
  Fly   197 SLPGAGGAAGAANSGCC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab35NP_001188678.1 Rab35 3..201 CDD:133310 81/212 (38%)
Rab2NP_001260732.1 PLN03108 1..213 CDD:178655 79/210 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454214
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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