DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pico and Grb7

DIOPT Version :9

Sequence 1:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster
Sequence 2:NP_445855.1 Gene:Grb7 / 84427 RGDID:619759 Length:535 Species:Rattus norvegicus


Alignment Length:522 Identity:126/522 - (24%)
Similarity:195/522 - (37%) Gaps:127/522 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 PGSAGMMVQP---PPPGGMTMGITLGVVTPREPRTES------PDNDSAFSDTVSLLSSESSASS 289
            ||:......|   ||||.:.....|.:.:.|:.|.|.      |...:.|.:..|          
  Rat    21 PGTPPETPPPPDNPPPGDVKRSQPLPIPSSRKLREEEFQATSLPSIPNPFPELCS---------- 75

  Fly   290 NTSLQQQQQQQQQQHHQHQQHHQHQQQQQKPQLAGAEKLHHHGVHGQHGGQQSGANSITKADKIQ 354
                                     ...|||.|.|:                |||..:...|..:
  Rat    76 -------------------------PPSQKPILGGS----------------SGARGLLPRDSSR 99

  Fly   355 LALHKLESAPIRRLFVKAFTSDGASKSLLVDERMGCGHVTRLLADKNHVQMQSNWALVEHLGDLQ 419
            |.:            ||.::.|||.:|:.|.......||..:|..:.|.....||.|||....|.
  Rat   100 LCV------------VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDENWGLVECHPYLA 152

  Fly   420 MERLFEDHELLVDNLMTWHSDAGNRVLFQQRPDKVTLFLRPELYLPGPQMAPGC-------QHDE 477
            :||..||||.:|:....|.....:|.:|::...|..||..|...|...:|...|       .|::
  Rat   153 LERGLEDHESVVEVQEAWPVGGDSRFIFRKNFAKYELFKSPPHTLFPEKMVSSCLDTPTGISHED 217

  Fly   478 QTRQMLLDEFFDSHNQLQMDGPLYM----KADPKKGWKRYHFVLRSSGLYYFPKEKTKNTRDLAC 538
                 |:..|.::.:..::.|.|.:    :...:|.|||:...||.|||||..|..:|:.|.|..
  Rat   218 -----LIQNFLNAGSFPEIQGFLQLRGSGRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQY 277

  Fly   539 LNLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVGDSSLGKSCRSLKMLCAEDLPTLDRWLTAIRVC 603
            :...:..|||.....||.:..|||  ||| .|..:.|....:.|.:.|:||..:...||:|.|:.
  Rat   278 VADINESNVYVVTQGRKLYGIPTD--FGF-CVKPNKLRNGHKGLHIFCSEDEQSRTCWLSAFRLF 339

  Fly   604 KYGKQLWDSH------------------KSLLEDLCLSRD-------------DAVSQSS-FAAS 636
            |||.||:.::                  :|:.::..::.|             :|:|.:: .|.:
  Rat   340 KYGVQLYKNYQQAQSRHLRLSYLGSPPLRSVSDNTLVAMDFSGHAGRVIENPQEALSAATEEAQA 404

  Fly   637 MRSESISSISSAVPSQCGSVSSAISSMSNSTSGRTSRASSSSSSGCLSDDNNAFDSEFTTGTIKR 701
            .|.::...:|...|....|:|:||........||.||..|....|    .....|..|.....:|
  Rat   405 WRKKTNHRLSLPTPCSGLSLSAAIHRTQPWFHGRISREESQRLIG----QQGLVDGVFLVRESQR 465

  Fly   702 KP 703
            .|
  Rat   466 NP 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picoNP_608363.1 GRB7_RA 364..451 CDD:176382 27/86 (31%)
PH_APBB1IP 489..614 CDD:269961 43/146 (29%)
PH 494..605 CDD:278594 38/114 (33%)
Grb7NP_445855.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..89 20/118 (17%)
RA_GRB7 102..186 CDD:340557 27/95 (28%)
PH_APBB1IP 224..350 CDD:269961 43/128 (34%)
BPS 369..413 CDD:401046 6/43 (14%)
SH2_Grb7 428..535 CDD:198276 11/44 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351279
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3751
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.