DRSC/TRiP Functional Genomics Resources

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Protein Alignment pico and mig-10

DIOPT Version :9

Sequence 1:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster
Sequence 2:NP_001367746.1 Gene:mig-10 / 176168 WormBaseID:WBGene00003243 Length:779 Species:Caenorhabditis elegans


Alignment Length:817 Identity:226/817 - (27%)
Similarity:346/817 - (42%) Gaps:243/817 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 RPLTPEAKQLSHTYRISMANLEDSQESELDQILGELSLLEAQISYTEASMLPAMCAPSAGAQIAP 176
            ||..|....:. |.|.||.|:::|.:.:||::|.||..||.|::           :.:.|.|:. 
 Worm   129 RPQVPPKPPID-TVRYSMNNIKESADWQLDELLEELEALETQLN-----------SSNGGDQLL- 180

  Fly   177 PPGVTQLPGSAPTMVSMSASSSRSHSRTNSTISADVSSCSSSGISENGHGLGLVLGGPGSAGMMV 241
             .||:.:|          |||||.:.::.||:                                 
 Worm   181 -LGVSGIP----------ASSSRENVKSISTL--------------------------------- 201

  Fly   242 QPPPPGGMTMGITLGVVTPREPR---------------------------TESPDNDSAFSDTVS 279
             ||||..::..     .||::|:                           ..|||.||||.|:.|
 Worm   202 -PPPPPALSYH-----QTPQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAFGDSSS 260

  Fly   280 LLSS-----ESSASSNTSLQQQQQQQQQQHHQHQQHHQHQQQQQKPQLAGAEKLHHHGVHGQHGG 339
            ..||     .|:.|||.|.:...             :.....|..|:            :|:...
 Worm   261 TESSNNRCRNSAFSSNDSCRDSL-------------NTPSPTQVSPR------------NGELNA 300

  Fly   340 QQSGANSITKADKIQLALHKLESAPIRRLFVKAFTSDGASKSLLVDERMGCGHVTRLLADKNHVQ 404
            :::      ||.||:.||.|::.|.:.::|||.|..||.:..||:|||.......:.||:|||:.
 Worm   301 EEA------KAQKIRQALEKMKEAKVTKIFVKFFVEDGEALQLLIDERWTVADTLKQLAEKNHIA 359

  Fly   405 MQSNWALVEHLGDLQMERLFEDHELLVDNLMTWHSDAGNRVLFQQRPDKVTLFLRPELYLPGP-- 467
            :..:..:||...:|.::|::||||.:|:|:..|..|:.|::.|.:||||.....||||||..|  
 Worm   360 LMEDHCIVEEYPELYIKRVYEDHEKVVENIQMWVQDSPNKLYFMRRPDKYAFISRPELYLLTPKT 424

  Fly   468 ----QMAPGCQHDEQTRQMLLDEFFDSHNQ----LQMDGPLYMKADPKKGWKRYHFVLRSSGLYY 524
                ::..|.|.....:|..:.|:|  |.:    .:|:|.||:|:|.:|.||:::||||.|||||
 Worm   425 SDHMEIPSGDQWTIDVKQKFVSEYF--HREPVVPPEMEGFLYLKSDGRKSWKKHYFVLRPSGLYY 487

  Fly   525 FPKEKTKNTRDLACLNLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVGDSSLGKSCRSLKMLCAED 589
            .||.|...|:||.||...|.:.||||:||.||:||||.:....|......  |..:.:|.:||||
 Worm   488 APKSKKPTTKDLTCLMNLHSNQVYTGIGWEKKYKSPTPWCISIKLTALQM--KRSQFIKYICAED 550

  Fly   590 LPTLDRWLTAIRVCKYGKQLWDSHKSLLEDLCLSRDDAVSQSSFAASMRSESI---SSISSAVPS 651
            ..|..:||.|:|:.|.|.:|.::::.                  |..:|.|::   ||:|:|   
 Worm   551 EMTFKKWLVALRIAKNGAELLENYER------------------ACQIRRETLGPASSMSAA--- 594

  Fly   652 QCGSVSSAISSMSNSTSGRTSRASSSSSSGCLSDD--NNAFDSEFTTGTIKRKPSMKPNLPLTTM 714
               |.|:|||.:.:|.| ...|..|.:||..||..  ||                  |..||:..
 Worm   595 ---SSSTAISEVPHSLS-HHQRTPSVASSIQLSSHMMNN------------------PTHPLSVN 637

  Fly   715 TRQLKEVG-EITICESAGGDASSPERSGTLTRRHSRRKSQ-ESNGSGTLKRRPIAVPVATVVKQT 777
            .|...... .:..|:.     |.|.|:.      ::.:.| :...:||:||.|:     .|:::.
 Worm   638 VRNQSPASFSVNSCQQ-----SHPSRTS------AKLEIQYDEQPTGTIKRAPL-----DVLRRV 686

  Fly   778 EPMGSASST-----SSSSNSTPTPTP--SICAKPPPGDSASLMCSSTLSLDSLPPPPPPPALDGS 835
            ....::|.|     |.|....|.|.|  |:...|||               ..||.|..|     
 Worm   687 SRASTSSPTIPQEESDSDEEFPAPPPVASVMRMPPP---------------VTPPKPCTP----- 731

  Fly   836 EDQDVYGSQLSLASLPPPPPP-EDVLAMNYAEPSSPS 871
                     |:....|||||. .|...:..|.|.:|:
 Worm   732 ---------LTSKKAPPPPPKRSDTTKLQSASPMAPA 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picoNP_608363.1 GRB7_RA 364..451 CDD:176382 30/86 (35%)
PH_APBB1IP 489..614 CDD:269961 55/128 (43%)
PH 494..605 CDD:278594 51/110 (46%)
mig-10NP_001367746.1 Ubiquitin_like_fold 321..406 CDD:421700 30/84 (36%)
PH_APBB1IP 452..575 CDD:269961 54/124 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166748
Domainoid 1 1.000 113 1.000 Domainoid score I3855
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 248 1.000 Inparanoid score I2027
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392068at33208
OrthoFinder 1 1.000 - - FOG0005410
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106466
Panther 1 1.100 - - LDO PTHR11243
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2645
SonicParanoid 1 1.000 - - X3810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.020

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