DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pico and Grb10

DIOPT Version :9

Sequence 1:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster
Sequence 2:NP_001357532.1 Gene:Grb10 / 14783 MGIID:103232 Length:621 Species:Mus musculus


Alignment Length:521 Identity:122/521 - (23%)
Similarity:204/521 - (39%) Gaps:121/521 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 NDSAFSDTVSLL------SSESSASSNTSLQQQQQQQQQQHHQ--HQQHHQHQQQQQK------- 319
            |..:.:||..||      |::.:|||:....|...:|:.|..|  |......::.||.       
Mouse    17 NMQSDTDTAPLLEDGQHASNQGAASSSRGQPQASPRQKMQRSQPVHILRRLQEEDQQLRTASLPA 81

  Fly   320 -----PQLAGA-------------------EKLHHHG-----VHGQH----------------GG 339
                 |:|.||                   ....|.|     :.|::                |.
Mouse    82 IPNPFPELTGAAPGSPPSVAPSSLPPPPSQPPAKHCGRCEKWIPGENTRGNGKRKIWRWQFPPGF 146

  Fly   340 Q-----------QSGANSITKADKIQ-----------LALHKLESAPIRRLFVKAFTSDGASKSL 382
            |           ::.|....|..|.|           :...::|...:|: .||.|:.||.||.:
Mouse   147 QLSKLTRPGLWTKTTARFSKKQPKNQCPTDTVNPVARMPTSQMEKLRLRK-DVKVFSEDGTSKVV 210

  Fly   383 LVDERMGCGHVTRLLADKNHVQMQSNWALVEHLGDLQMERLFEDHELLVDNLMTWHSDAGNRVLF 447
            .:...|....:.:||..|:|....::|.||||...|.:||..||||::|....|..|:  ::.||
Mouse   211 EILTDMTARDLCQLLVYKSHCVDDNSWTLVEHHPQLGLERCLEDHEIVVQVESTMPSE--SKFLF 273

  Fly   448 QQRPDKVTLFLRPELYLPGPQMAPGCQHDEQTRQMLLDEFFDSHNQLQMDGPLYMKADPKKGWKR 512
            ::...|...|..|..:.| .||...||.....:..||..|.::.:..::.|.|.:|...:|.||:
Mouse   274 RKNYAKYEFFKNPVNFFP-DQMVNWCQQSNGGQAQLLQNFLNTSSCPEIQGFLQVKEVGRKSWKK 337

  Fly   513 YHFVLRSSGLYYFPKEKTKNTRDLACLNLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVGDSSLGK 577
            .:..||.|||||..|..:|..|.|..|......:::..:..:|::.:|.::....|   .:....
Mouse   338 LYVCLRRSGLYYSTKGTSKEPRHLQLLADLEESSIFYLIAGKKQYNAPNEHGMCIK---PNKAKT 399

  Fly   578 SCRSLKMLCAEDLPTLDRWLTAIRVCKYGKQLWDSH----------------KSLLEDLCLSRD- 625
            ..:.|::|||||......|:||.|:.|||..|:.::                :|:.|:..::.| 
Mouse   400 EMKELRLLCAEDEQIRTCWMTAFRLLKYGMLLYQNYRIPQRKGLPPPFNAPMRSVSENSLVAMDF 464

  Fly   626 ---------------DAVSQSSFAASMRSESISSISSAVPSQCGSVSSAISSMSNSTSGRTSRAS 675
                           .|..:...|...||..::.:||..|....::::.|....:...||.||..
Mouse   465 SGQIGRVIDNPAEAQSAALEEGHAWRKRSTRMNILSSQSPLHPSTLNAVIHRTQHWFHGRISREE 529

  Fly   676 S 676
            |
Mouse   530 S 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picoNP_608363.1 GRB7_RA 364..451 CDD:176382 30/86 (35%)
PH_APBB1IP 489..614 CDD:269961 35/140 (25%)
PH 494..605 CDD:278594 31/110 (28%)
Grb10NP_001357532.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..118 21/100 (21%)
RA_GRB10 197..285 CDD:340558 31/89 (35%)
PH_APBB1IP 314..436 CDD:269961 35/124 (28%)
BPS 453..494 CDD:312490 6/40 (15%)
SH2_Grb10 514..621 CDD:198278 6/17 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847711
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3751
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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