DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pico and GAB4

DIOPT Version :9

Sequence 1:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster
Sequence 2:XP_016884064.1 Gene:GAB4 / 128954 HGNCID:18325 Length:575 Species:Homo sapiens


Alignment Length:535 Identity:105/535 - (19%)
Similarity:183/535 - (34%) Gaps:154/535 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   503 KADPKK-----GWKRYHFVLR----SSG---LYYFPKEKTKNTRDLACLNLFHGHNVYTGLGWRK 555
            |:.|:|     .|::..|:||    ||.   |.|:..:.:|.......|||....:|...|.:.|
Human    48 KSPPEKKLRLFAWRKRWFILRRGQTSSDPDVLEYYKNDGSKKPLRTINLNLCEQLDVDVTLNFNK 112

  Fly   556 KWKSPTDYTFGFKAVGDSSLGKSCRSLKMLCAEDLPTLDRWLTAI-RVCKYGKQ-----LWD--- 611
            | :....|.|..|.        |.|:. .|.||....::.|:.:| ::|.:.::     |.:   
Human   113 K-EIQKGYMFDIKT--------SERTF-YLVAETREDMNEWVQSICQICGFRQEESTGFLGNISS 167

  Fly   612 --------------SHKSLLEDLCLSRDDAVS----------------QSSFAASMRSESISSIS 646
                          ||:.|.::...:.:..||                :|...||.|:|...|.|
Human   168 ASHGLCSSPAEPSCSHQHLPQEQEPTSEPPVSHCVPPTWPIPAPPGCLRSHQHASQRAEHARSAS 232

  Fly   647 SAVPSQCGSVSSAISSMSNSTS------------------------------GRTSR-----ASS 676
            .:..|:...:....::|.|...                              |.|.|     ||.
Human   233 FSQGSEAPFIMRRNTAMQNLAQHSGYSVDGVSGHIHGFHSLSKPSQHNAEFRGSTHRIPWSLASH 297

  Fly   677 SSSSGCLSD---DNNAFDSEFTT--GTIKRKPSMKPN------LPLTTMTRQLKEVGEITICESA 730
            ..:.|.|:.   ||.|...::|.  |....:|:...:      ||..|:         :.:.:|.
Human   298 GHTRGSLTGSEADNEASSGKYTQHGGGNASRPAESMHEGVCSFLPGRTL---------VGLSDSI 353

  Fly   731 GGDASS-PERSGTLTRRHSRRKSQESNGSGTLKRRPIAVPVATVVKQTEPMG------SASSTSS 788
            ..:.|. |...|:.|....::...:|.|        :.:||.:.:.:.:.:|      |.....|
Human   354 ASEGSCVPMNPGSPTLPAVKQAGDDSQG--------VCIPVGSCLVRFDLLGSPLTELSMHQDLS 410

  Fly   789 SSNSTPTPTPSICAKP-------PPGDSASLMCSSTLSLDSLPPPPPPPALDGSEDQDVYGSQLS 846
            ..:....|..:...||       ||    :|..:..::..|..||...|....|...|...||..
Human   411 QGHEVQLPPVNRSLKPNQKANPTPP----NLRNNRVINELSFKPPVTEPWSGTSHTFDSSSSQHP 471

  Fly   847 LASLPPPPPPEDVLAMNYAEPSSPSTPTPMS---TPMIMPNSNGSLP-PAVPAKPMKPAVKQAAG 907
            :::........:.....|..|.:|::..|:|   :....|.|.|::. .|:..:|.||::.....
Human   472 ISTQSITNTDSEDSGERYLFPQNPASAFPVSGGTSSSAPPRSTGNIHYAALDFQPSKPSIGSVTS 536

  Fly   908 GLKAAPPYKAPPDYV 922
            |.|.        |||
Human   537 GKKV--------DYV 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picoNP_608363.1 GRB7_RA 364..451 CDD:176382
PH_APBB1IP 489..614 CDD:269961 32/145 (22%)
PH 494..605 CDD:278594 30/114 (26%)
GAB4XP_016884064.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3751
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.