DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pico and raph1

DIOPT Version :9

Sequence 1:NP_608363.1 Gene:pico / 33003 FlyBaseID:FBgn0261811 Length:1162 Species:Drosophila melanogaster
Sequence 2:XP_031749560.1 Gene:raph1 / 100491727 XenbaseID:XB-GENE-5933838 Length:1279 Species:Xenopus tropicalis


Alignment Length:1272 Identity:327/1272 - (25%)
Similarity:495/1272 - (38%) Gaps:344/1272 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 VIGAGAGAGVKLRRHSD----------RPLTPEAKQLSHTYRISMANLEDS----QESELDQILG 145
            :.||..|...||.:..|          .||..|....:.:||.||.|:.::    :..:||.::.
 Frog    27 MFGAWLGELDKLTQSLDTEKTEEPVKRSPLRQETNLANFSYRFSMYNINEALNQGEPVDLDALMA 91

  Fly   146 ELSLLEAQISY--TEASMLPAMCAPSAGAQIAPPPGVTQLPGSAPTMVSMSASSSRSHSRTNSTI 208
            :|..:|.::|.  |.:|....|......:|  .|||....|..: ::..:.:||.|....:::..
 Frog    92 DLCSIEQELSSIGTHSSKNTLMFQERKPSQ--KPPGSRMTPKQS-SLKGLPSSSGRMPKPSHANF 153

  Fly   209 SAD--VSSCSSSGISENGHGLGLVLGGPGSAGMMVQPPPPGGMTMGITLGVVTPREPRTES---- 267
            |.|  .:....:.:|.:          ..:...:|:...|          ::|....||.|    
 Frog   154 SLDDITAQLEQASLSMD----------EAARQTVVEDVKP----------IITTHHRRTASAGTV 198

  Fly   268 PDNDSAFSDTVSLLSSESSASSNTSLQQQQQQQQQ-----QHHQHQQHHQHQQQQQKPQLAG-AE 326
            .|:|.......|..|..|:|||..||...:..:.|     |..|....|.:..::....|.. |.
 Frog   199 SDSDLRSVSNSSRSSITSAASSMDSLDIDKMTRPQDLELLQPGQPISEHSYLDRETSILLRNIAG 263

  Fly   327 KLHHHGVHGQHGGQQSGANSITKADKIQLALHKLESAPIRRLFVKAFTSDGASKSLLVDERMGCG 391
            |..|.....:...:       .||:||::||.|::.|.:::|.::...||.:||:::||||....
 Frog   264 KPTHLLTKEEQAAK-------IKAEKIRIALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVR 321

  Fly   392 HVTRLLADKNHVQMQSNWALVEHLGDLQMERLFEDHELLVDNLMTWHSDAGNRVLFQQRPDKVTL 456
            .|...|.||:|.....:|:|||.:.:|||||:|||||.||:||:.|..|:.|:::|.:|.:|..|
 Frog   322 QVLDNLMDKSHCGYSLDWSLVETISELQMERIFEDHENLVENLLNWTRDSQNKLMFVERIEKYAL 386

  Fly   457 FLRPELYLPG----PQMAPGCQHDEQTRQMLLDEFF--DSHNQLQMDGPLYMKADPKKGWKRYHF 515
            |..|:.||.|    .:||      ::.:::||:|.|  .|....:::|.|::|.|.||.||:.:|
 Frog   387 FKNPQNYLLGRKETSEMA------DRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYF 445

  Fly   516 VLRSSGLYYFPKEKTKNTRDLAC-LNLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVGDSSLGKSC 579
            :||:||:||.||.|.|.:|||.| |.|.| .|||.|..:|.|:|:||||....|   ...:.|..
 Frog   446 LLRASGIYYVPKGKAKASRDLVCFLQLDH-VNVYYGQDYRSKYKAPTDYCLVLK---HPQIQKKS 506

  Fly   580 RSLKMLCAEDLPTLDRWLTAIRVCKYGKQLWDSHKSLLEDLCLSRDDAVSQSSFAASMRSESISS 644
            :.:|.||.:|:.||.:|:..:|:.||||||:.:::           :|:.::..|....|.|.||
 Frog   507 QYIKYLCCDDVRTLHQWVNGLRIAKYGKQLYTNYQ-----------EALKRTEAAYDWTSMSTSS 560

  Fly   645 ISSAVPSQCGSVSSAI----SSMSNSTSGRTSRASSSSSSGCLSDDNNAFDSEFTTGTIKRKPSM 705
            :.|      ||.||::    |:.||.:.|...:|.|...|..:.  ::.|...:..|| :.:.|.
 Frog   561 MKS------GSSSSSLPESQSNHSNQSDGSDIQAMSHVRSQSIV--SSIFSEAWKRGT-QLEESS 616

  Fly   706 KPNL-----PLTTMTR----QLKEVGEITI----------------------------CESAGGD 733
            |..:     |.|::::    |::.|.....                            .:|....
 Frog   617 KARMESLSRPSTSLSQHSHVQIRAVSPHAASQPSPLAPPPPPPPPPPPPPPPPPPPLPTQSKSPS 681

  Fly   734 ASSP---ERSGTLTR---------RHSRRKSQESNGSGTLKRRPIAVPVATV--------VKQTE 778
            .|:|   .:..|:||         .|.:..|...|.|.:.|.:.:..|...:        .....
 Frog   682 VSAPILFAKYSTITRLQNASQYPGPHFKSPSLNQNVSQSTKPQMVVTPNGAIPPPPPPPPPPPPP 746

  Fly   779 PMGSASSTSSSSNSTPTPTPSICAKPPPGDSASLMCSSTLSLDS------LPPPPPPPALDGSED 837
            |.|||.:....|..||: .|.....|||.....:...:|:....      ||||||||.      
 Frog   747 PPGSAMAMLKPSPCTPS-MPQFTPPPPPLKIHQIQQINTIQATQPPPPPPLPPPPPPPP------ 804

  Fly   838 QDVYGSQLSLASLPPPPPPE------------DVLAMNYAEPSS--------------------- 869
                         ||||||:            ..:|.....|||                     
 Frog   805 -------------PPPPPPQFQAPVKSNAPINKTVAPIATVPSSASLGPPTAPKKQMHFTPSLIQ 856

  Fly   870 --------PSTPTPMSTPMIMPNSNG-SLPPAVPAKPMKPAVKQAAGGLKAAPPYKAPPDYV--- 922
                    ||.|||   |..:|.... |.||:.|..|| |:|||........||...||...   
 Frog   857 QPPQASSVPSGPTP---PPTLPKQQSFSKPPSSPQSPM-PSVKQIVSQFPPPPPSDQPPKQSISN 917

  Fly   923 ---------------GPALLPGPPLPPPPPAQKKVSFADSPVLLRRKMCSPEPVLPQRSPSTTLS 972
                           .|..:|.|..|||||..........|         |.|..|..||:..||
 Frog   918 SVPQSPPAVKAKPKWQPFSVPSPEFPPPPPESSLALLPPPP---------PPPPAPATSPAPPLS 973

  Fly   973 ---CHSSSSAGSAYQTYAPGPMLPPRADVARLSSLSNGSSSEVTSPK---------RLQESASNP 1025
               ....|.:....:|.:||...||... .|.||:.:.||:|....|         |..||..:|
 Frog   974 PTPDKMGSPSKKPSKTSSPGGKKPPPTP-QRNSSIKSNSSAEYQESKKSSVDSLVSRFSESPGSP 1037

  Fly  1026 PRDFLKDLQRVMRKKWQVAQKCKAEPATTPHEVLGFRDFSNEDLLAAHNLN-SGANSSHYYRETA 1089
            .::.                   |.|...|              |....|| ||.|....::: .
 Frog  1038 SKEL-------------------APPTAAP--------------LKPAKLNLSGVNLPMVFQQ-V 1068

  Fly  1090 NVSHWVRKHYEYAHNALYENVHAQSAAAAGVPGSGEATTPP-------LPPPP----------GN 1137
            |||..|        ..|.::....:......|...|...||       |||||          ||
 Frog  1069 NVSSQV--------PCLKQSAKEPATEFPSPPSDSEPDFPPPPADLELLPPPPPSDGTPVVFSGN 1125

  Fly  1138 S----------------VAAKKRPPPPPPKRSDKTHL 1158
            :                .:.||.|||..|||:|...|
 Frog  1126 TSPKVAVVNPQPQTWSKSSVKKAPPPTMPKRNDSVRL 1162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
picoNP_608363.1 GRB7_RA 364..451 CDD:176382 36/86 (42%)
PH_APBB1IP 489..614 CDD:269961 54/125 (43%)
PH 494..605 CDD:278594 47/111 (42%)
raph1XP_031749560.1 RA_MRL_Lpd 294..383 CDD:340553 37/88 (42%)
PH_APBB1IP 419..541 CDD:269961 54/125 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6988
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 276 1.000 Inparanoid score I2877
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49527
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.050

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