DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SkpC and ELC1

DIOPT Version :9

Sequence 1:NP_608358.1 Gene:SkpC / 32996 FlyBaseID:FBgn0026175 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_015279.1 Gene:ELC1 / 856061 SGDID:S000005967 Length:99 Species:Saccharomyces cerevisiae


Alignment Length:121 Identity:29/121 - (23%)
Similarity:51/121 - (42%) Gaps:29/121 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAPTIKLESSDGMIFSTEVRAAKLSETIKTMLEVSAVENDENAIVPLPKVNAFILSKILTWIYH 65
            |....:.|.|.|...:.....||.:|.|:|.|:|  ....:....:.|.:.::.||.|.:.::.:
Yeast     1 MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIE--GPFRESKGRIELKQFDSHILEKAVEYLNY 63

  Fly    66 H-------KDDDAHGAEGVELSPQSPHDISAWDANFINVDQPTLFEIILAANYLEI 114
            :       :|||    |..|.  :.|.::|              .|::|||:||.|
Yeast    64 NLKYSGVSEDDD----EIPEF--EIPTEMS--------------LELLLAADYLSI 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpCNP_608358.1 Skp1 6..114 CDD:214704 27/114 (24%)
Skp1 88..>146 CDD:279768 8/27 (30%)
ELC1NP_015279.1 BTB_POZ_EloC 5..99 CDD:349630 27/115 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.