DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpC and CG15800

DIOPT Version :9

Sequence 1:NP_608358.1 Gene:SkpC / 32996 FlyBaseID:FBgn0026175 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_611828.1 Gene:CG15800 / 37763 FlyBaseID:FBgn0034904 Length:157 Species:Drosophila melanogaster


Alignment Length:139 Identity:42/139 - (30%)
Similarity:68/139 - (48%) Gaps:16/139 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IKLESSDGMIFSTEVRAAKLSETIKTMLEVSAVENDENAIVPLPKVNAFILSKILTWI-YHHKDD 69
            ::.|:.||...|..:...:.|..|:.|..|..|..||:.::||..:::.:|.|||.|. ||.|.:
  Fly     2 VRFETRDGRTISVNLALLEKSLVIREMCRVGQVPEDEDFVLPLHGIHSNVLLKILLWAEYHEKHE 66

  Fly    70 --------DAHGAEGVELSPQSPHDISAWDANFINVDQPTLFEIILAANYLEIKGLVDLCCKTVA 126
                    |...||.:||      .||.||..|:.|:..::.:|:...|||:|..|..||.:.:.
  Fly    67 EPAWVDSKDPLPAEEIEL------QISDWDKEFLRVEIDSICKIMEGCNYLDIPWLYKLCAQKLV 125

  Fly   127 NMIRGKTPE 135
             .:..:.||
  Fly   126 -FLSSREPE 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpCNP_608358.1 Skp1 6..114 CDD:214704 36/116 (31%)
Skp1 88..>146 CDD:279768 15/48 (31%)
CG15800NP_611828.1 BTB 1..113 CDD:295341 36/116 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5201
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S272
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.860

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