DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpC and SkpF

DIOPT Version :9

Sequence 1:NP_608358.1 Gene:SkpC / 32996 FlyBaseID:FBgn0026175 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_611796.1 Gene:SkpF / 37713 FlyBaseID:FBgn0034863 Length:171 Species:Drosophila melanogaster


Alignment Length:156 Identity:79/156 - (50%)
Similarity:105/156 - (67%) Gaps:7/156 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PTIKLESSDGMIFSTEVRAAKLSETIKTMLEVSAVENDENAIVPLPKVNAFILSKILTWIYHHKD 68
            |.|||:||||.||.|::..||.|.||||:||...||.:.:.::|||.||:.||.|:|.|..||::
  Fly     2 PVIKLQSSDGEIFETDIETAKCSSTIKTLLEDCPVEAENDTLIPLPNVNSTILKKVLIWAKHHRE 66

  Fly    69 DDAHGAEGVELSPQSPHDISAWDANFINVDQPTLFEIILAANYLEIKGLVDLCCKTVANMIRGKT 133
            |.|...| .|.:......|:.|||.|:::||.||||:|||||||:|..|::..|.||||||:|:|
  Fly    67 DIAEENE-EEAAKSVAVQITPWDAEFLSMDQGTLFELILAANYLDIPNLLNAACMTVANMIKGRT 130

  Fly   134 PEEIRHTFNIPDEI-PSRTAQLGEDL 158
            .||||.||:|.::. ||.     |||
  Fly   131 TEEIRQTFHITNDFSPSE-----EDL 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpCNP_608358.1 Skp1 6..114 CDD:214704 55/107 (51%)
Skp1 88..>146 CDD:279768 35/57 (61%)
SkpFNP_611796.1 SKP1 1..157 CDD:227528 79/156 (51%)
Skp1 1..111 CDD:214704 56/109 (51%)
Skp1 87..157 CDD:279768 40/70 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452334
Domainoid 1 1.000 51 1.000 Domainoid score I4316
eggNOG 1 0.900 - - E1_COG5201
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I1572
Isobase 1 0.950 - 0 Normalized mean entropy S272
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1412723at2759
OrthoFinder 1 1.000 - - FOG0000367
OrthoInspector 1 1.000 - - otm46619
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X346
1110.850

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