Protein Alignment SkpC and skr-13

DIOPT Version :10

• Sequence 1: NP_608358.1
• Gene: SkpC / 32996
• FlyBaseID: FBgn0026175
• Length: 158
• Species: Drosophila melanogaster
• Sequence 2: NP_503042.1
• Gene: skr-13 / 178493
• WormBaseID: WBGene00004819
• Length: 172
• Species: Caenorhabditis elegans
• Alignment Length: 171
• Identity: 55/171 - (32%)
• Similarity: 83/171 - (48%)
• Gaps: 31/171 - (18%)

  Fly     2 DAP----TIKLESSDGMIFSTEVRAAKLSETIKTMLE--VSAVENDENA-IVPLPKVNAFILSKI 59
            |||    ..|:.||||::.....:|.:.|:|:..::|  ...:||.|.. .:|:..||...::|:
 Worm     7 DAPAAEIVYKIISSDGVVSKMSEKAVQQSKTLSNLIENLGYTIENIETRDPIPVTNVNGKTMAKV 71

  Fly    60 LTWIYHHKDDDAHGAEGVELSPQSPHD---------ISAWDANFINVDQPTLFEIILAANYLEIK 115
            ......||.|            ..|.|         |..||..|:.::...||::|||:|:|:||
 Worm    72 AELCEKHKAD------------AIPEDNMNVLKTLTIPEWDQKFLKIEDEALFDLILASNFLDIK 124

  Fly   116 GLVDLCCKTVANMIRGKTPEEIRHTFNI---PDEIPSRTAQ 153
            ||:...||||:||.:|||..|:|..|.|   ..:....|||
 Worm   125 GLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQ 165

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SkpC	NP_608358.1	BTB_POZ_SKP1	5..129	CDD:349631	41/135 (30%)
		Skp1	115..>146	CDD:460222	16/33 (48%)
skr-13	NP_503042.1	BTB_POZ_SKP1	14..138	CDD:349631	41/135 (30%)
		Skp1	124..169	CDD:460222	19/42 (45%)