DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpC and gcnt3

DIOPT Version :10

Sequence 1:NP_608358.1 Gene:SkpC / 32996 FlyBaseID:FBgn0026175 Length:158 Species:Drosophila melanogaster
Sequence 2:XP_004917977.1 Gene:gcnt3 / 100486486 XenbaseID:XB-GENE-5887146 Length:443 Species:Xenopus tropicalis


Alignment Length:91 Identity:21/91 - (23%)
Similarity:40/91 - (43%) Gaps:21/91 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 NAFILSKILTWIY--H-----HKDDDAHGAEGVELSPQSPHD-ISAWDANFINVDQPTLFEIILA 108
            |..:..::|..||  |     |.|         :.||:|.|. :.|..:.|.||...:....::.
 Frog   143 NIEMFERLLRAIYTPHNIYCVHMD---------KKSPESFHQAVRAITSCFGNVFVASKLVNVVY 198

  Fly   109 ANYLEIKGLVDLCCKTVANMIRGKTP 134
            |::..::  .||.|  :.::::.|.|
 Frog   199 ASWRRVQ--ADLNC--MEDLLQSKVP 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpCNP_608358.1 BTB_POZ_SKP1 5..129 CDD:349631 19/84 (23%)
Skp1 115..>146 CDD:460222 5/20 (25%)
gcnt3XP_004917977.1 Branch 134..404 CDD:452742 21/91 (23%)

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