DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpD and skr-3

DIOPT Version :9

Sequence 1:NP_608357.2 Gene:SkpD / 32995 FlyBaseID:FBgn0026174 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_507059.1 Gene:skr-3 / 180081 WormBaseID:WBGene00004809 Length:167 Species:Caenorhabditis elegans


Alignment Length:151 Identity:65/151 - (43%)
Similarity:91/151 - (60%) Gaps:7/151 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IKLESSDGVIFSTEVKAAKLSETIKTMLEVSAVENDENA---VVPLPKVNAFILNKILTWAYHHK 67
            |||.|||...|:...|....|:||..:::...:|...:.   .:||.||.:.||.||:||..||.
 Worm    10 IKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEESGSTSEDTIPLQKVTSTILEKIITWCEHHA 74

  Fly    68 DDDDQAAEGEELTPQSPHDISPWDANFINVDQPILFEITVAANYLEIKGLEDLCCKTLANMIRGK 132
            ||:.:..:..:.|.    |||.|||.|:.|||..||||.:|||||:|:||.|:..:.:|||::||
 Worm    75 DDEPKKVDENKKTV----DISEWDAEFMKVDQGTLFEIILAANYLDIRGLLDVTTQNVANMMKGK 135

  Fly   133 TPEEIRQTFNIEDDLPIDTAE 153
            ||.:||..||||:|...:..|
 Worm   136 TPSQIRTLFNIENDFSEEERE 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpDNP_608357.2 Skp1 6..114 CDD:214704 46/110 (42%)
Skp1 88..>147 CDD:279768 34/58 (59%)
skr-3NP_507059.1 Skp1 7..117 CDD:214704 46/110 (42%)
SKP1 10..167 CDD:227528 65/151 (43%)
Skp1 91..165 CDD:279768 36/66 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160659
Domainoid 1 1.000 56 1.000 Domainoid score I7318
eggNOG 1 0.900 - - E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S272
OMA 1 1.010 - - QHG54148
OrthoDB 1 1.010 - - D1412723at2759
OrthoFinder 1 1.000 - - FOG0000367
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X346
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.810

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