Protein Alignment SkpD and skr-12

DIOPT Version :9

• Sequence 1: NP_608357.2
• Gene: SkpD / 32995
• FlyBaseID: FBgn0026174
• Length: 158
• Species: Drosophila melanogaster
• Sequence 2: NP_001367151.1
• Gene: skr-12 / 178496
• WormBaseID: WBGene00004818
• Length: 172
• Species: Caenorhabditis elegans
• Alignment Length: 166
• Identity: 57/166 - (34%)
• Similarity: 88/166 - (53%)
• Gaps: 19/166 - (11%)

  Fly     1 MDAP----TIKLESSDGVIFSTEVKAAKLSETIKTMLE--VSAVENDENA-VVPLPKVNAFILNK 58
            :|||    ..|:.|||||:.....||.:.|:|:..::|  ...:||.|.. .:|:..||...:.|
 Worm     6 VDAPAAEIVYKIISSDGVVSKMSEKAVQQSKTLSNLIENLGYTIENIETRDPIPVTNVNGKTMAK 70

  Fly    59 ILTWAYHHKDD---DDQAAEGEELTPQSPHDISPWDANFINVDQPILFEITVAANYLEIKGLEDL 120
            :..|...||.|   :|.....:.||      |..||..|:.::...||::.:|:|:|:||||...
 Worm    71 VAEWCEKHKADAIPEDNMNVLKTLT------IPEWDQKFLKIEDEALFDLILASNFLDIKGLMYF 129

  Fly   121 CCKTLANMIRGKTPEEIRQTFNI---EDDLPIDTAE 153
            .|||::||.:|||..|:|:.|.|   |.|...:||:
 Worm   130 GCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQ 165

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SkpD	NP_608357.2	Skp1	6..114	CDD:214704	34/113 (30%)
		Skp1	88..>147	CDD:279768	25/61 (41%)
skr-12	NP_001367151.1	BTB_POZ_SKP1	14..138	CDD:349631	42/129 (33%)
		Skp1	124..161	CDD:396171	17/36 (47%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160160667
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5201
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S272
OMA	1	1.010	-	-		QHG54148
OrthoDB	1	1.010	-	-		D1412723at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11165
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	7.810