DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpD and skr-8

DIOPT Version :9

Sequence 1:NP_608357.2 Gene:SkpD / 32995 FlyBaseID:FBgn0026174 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_503044.1 Gene:skr-8 / 178495 WormBaseID:WBGene00004814 Length:194 Species:Caenorhabditis elegans


Alignment Length:164 Identity:56/164 - (34%)
Similarity:86/164 - (52%) Gaps:21/164 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DAPTI-----KLESSDGVIFSTEVKAAKLSETIKTMLEVSAVENDENAVVPLP--KVNAFILNKI 59
            :||.:     |:||:||.:|....:|.|.|..:..::...|.| |..::.|:|  .|...||..:
 Worm    14 EAPVVAPIMYKVESNDGKVFEISDEAVKQSNILSNLISTCAPE-DVASMDPIPITNVTGNILKMV 77

  Fly    60 LTWAYHHKDDDDQAAEGEELTPQS---PHDIS--PWDANFINVDQPILFEITVAANYLEIKGLED 119
            :.|...||        ||.|..:.   |.:|:  .||.||:.:|..:||::.||.|||::.||.:
 Worm    78 IEWCEKHK--------GEALPVEDDSVPKNINVPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMN 134

  Fly   120 LCCKTLANMIRGKTPEEIRQTFNIEDDLPIDTAE 153
            ..||.:|||..||:|:|:|..|.|..|...:.||
 Worm   135 YGCKMVANMAIGKSPDELRIIFAIPTDEEDEAAE 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpDNP_608357.2 Skp1 6..114 CDD:214704 37/119 (31%)
Skp1 88..>147 CDD:279768 26/60 (43%)
skr-8NP_503044.1 Skp1 20..129 CDD:214704 37/117 (32%)
Skp1 103..>161 CDD:279768 26/57 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160660
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54148
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

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