DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abcd3 and ABCD4

DIOPT Version :10

Sequence 1:NP_608354.1 Gene:Abcd3 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_005041.1 Gene:ABCD4 / 5826 HGNCID:68 Length:606 Species:Homo sapiens


Alignment Length:617 Identity:182/617 - (29%)
Similarity:308/617 - (49%) Gaps:60/617 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FFKQLRQLLPILIPGFWSVETGLLFLVAAALIGRSVSDIWMIQNATVVESTIIHMNRTK----FK 127
            |.::..|:|.:|.|. ||.:..|:||....|   ::.:.::|....::.|....:...|    ||
Human    20 FLQRFLQILKVLFPS-WSSQNALMFLTLLCL---TLLEQFVIYQVGLIPSQYYGVLGNKDLEGFK 80

  Fly   128 TALLKYLTALPAISVVTN-VLK----WSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIA 187
            |     ||.|..:.:|.| .||    ::...|.:.:|.:||.||:..|..|..||.::.|.:.|.
Human    81 T-----LTFLAVMLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRGRAYYTLNVLRDDID 140

  Fly   188 NADQLLTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTRLR 252
            |.||.::.|:::||...:.:.|.:......:..|.|:...:.|...|..:..|.:...|....|.
Human   141 NPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLGPVSIFGYFILGTVVNKTLM 205

  Fly   253 RPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQ-GNVREKLT------LLASYSKLRSHLRKF 310
            .|.....|.::||||:||:.:.::..|:|..|||: |:|....|      ||.:..:|.|   |.
Human   206 GPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHMRTDRRLQRLLQTQRELMS---KE 267

  Fly   311 LEFRVSMGIIDNIIGKYFASIVGFYAVSIPFFSENHPLLSGENSGQRLQAYYTYGRML-VKLAEA 374
            |...:.:...|     |..||:.:..::||.||.    :.|:.|...|....:....: :.|...
Human   268 LWLYIGINTFD-----YLGSILSYVVIAIPIFSG----VYGDLSPAELSTLVSKNAFVCIYLISC 323

  Fly   375 IGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIM 439
            ..:|:.....:|.:||:|.|:.:|.:.|.|::..:.:..:          :|.:........|..
Human   324 FTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSLKSQDCEI----------LGESEWGLDTPPGWP 378

  Fly   440 CFE--DNIIRFEKVPLVTPNGD-VLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGG 501
            ..|  |.....|:|.:..|:.| .|:::||.::..|.::|:.|..|.||:||.|:||.||.:..|
Human   379 AAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRG 443

  Fly   502 KVTKPS----RGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDED-LMHYLDIVQLTYLE 561
            .|...:    .|.|| :||:|:.|.||||:|:||| .::.....|.:|:: ::.:|::..|:.|.
Human   444 SVQMLTDFGPHGVLF-LPQKPFFTDGTLREQVIYP-LKEVYPDSGSADDERILRFLELAGLSNLV 506

  Fly   562 QRENGLDSIED--WIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGI 624
            .|..|||...|  |.||||.||.||::.|||||.:|::|:|||.|||::.:||.::|...:::|:
Human   507 ARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGM 571

  Fly   625 TLFTVSHRKSLWAHHDYYLQFDGRGSYEFATI 656
            |..:|.||:||...|...|:..|.|.:|...|
Human   572 TFISVGHRQSLEKFHSLVLKLCGGGRWELMRI 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abcd3NP_608354.1 3a01203 3..653 CDD:273360 180/612 (29%)
ABCD4NP_005041.1 YddA 68..603 CDD:443337 168/563 (30%)

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