DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pmp70 and ABCD4

DIOPT Version :9

Sequence 1:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_005041.1 Gene:ABCD4 / 5826 HGNCID:68 Length:606 Species:Homo sapiens


Alignment Length:617 Identity:182/617 - (29%)
Similarity:308/617 - (49%) Gaps:60/617 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FFKQLRQLLPILIPGFWSVETGLLFLVAAALIGRSVSDIWMIQNATVVESTIIHMNRTK----FK 127
            |.::..|:|.:|.|. ||.:..|:||....|   ::.:.::|....::.|....:...|    ||
Human    20 FLQRFLQILKVLFPS-WSSQNALMFLTLLCL---TLLEQFVIYQVGLIPSQYYGVLGNKDLEGFK 80

  Fly   128 TALLKYLTALPAISVVTN-VLK----WSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIA 187
            |     ||.|..:.:|.| .||    ::...|.:.:|.:||.||:..|..|..||.::.|.:.|.
Human    81 T-----LTFLAVMLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRGRAYYTLNVLRDDID 140

  Fly   188 NADQLLTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTRLR 252
            |.||.::.|:::||...:.:.|.:......:..|.|:...:.|...|..:..|.:...|....|.
Human   141 NPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLGPVSIFGYFILGTVVNKTLM 205

  Fly   253 RPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQ-GNVREKLT------LLASYSKLRSHLRKF 310
            .|.....|.::||||:||:.:.::..|:|..|||: |:|....|      ||.:..:|.|   |.
Human   206 GPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHMRTDRRLQRLLQTQRELMS---KE 267

  Fly   311 LEFRVSMGIIDNIIGKYFASIVGFYAVSIPFFSENHPLLSGENSGQRLQAYYTYGRML-VKLAEA 374
            |...:.:...|     |..||:.:..::||.||.    :.|:.|...|....:....: :.|...
Human   268 LWLYIGINTFD-----YLGSILSYVVIAIPIFSG----VYGDLSPAELSTLVSKNAFVCIYLISC 323

  Fly   375 IGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIM 439
            ..:|:.....:|.:||:|.|:.:|.:.|.|::..:.:..:          :|.:........|..
Human   324 FTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSLKSQDCEI----------LGESEWGLDTPPGWP 378

  Fly   440 CFE--DNIIRFEKVPLVTPNGD-VLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGG 501
            ..|  |.....|:|.:..|:.| .|:::||.::..|.::|:.|..|.||:||.|:||.||.:..|
Human   379 AAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRG 443

  Fly   502 KVTKPS----RGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDED-LMHYLDIVQLTYLE 561
            .|...:    .|.|| :||:|:.|.||||:|:||| .::.....|.:|:: ::.:|::..|:.|.
Human   444 SVQMLTDFGPHGVLF-LPQKPFFTDGTLREQVIYP-LKEVYPDSGSADDERILRFLELAGLSNLV 506

  Fly   562 QRENGLDSIED--WIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGI 624
            .|..|||...|  |.||||.||.||::.|||||.:|::|:|||.|||::.:||.::|...:::|:
Human   507 ARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGM 571

  Fly   625 TLFTVSHRKSLWAHHDYYLQFDGRGSYEFATI 656
            |..:|.||:||...|...|:..|.|.:|...|
Human   572 TFISVGHRQSLEKFHSLVLKLCGGGRWELMRI 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 180/612 (29%)
ABC_membrane_2 63..342 CDD:284003 78/290 (27%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 83/212 (39%)
ABCD4NP_005041.1 3a01203 9..600 CDD:273360 180/612 (29%)
ABC_membrane_2 16..294 CDD:284003 78/290 (27%)
ABCD_peroxisomal_ALDP 387..598 CDD:213190 83/212 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100236
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.720

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