DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pmp70 and pmp-4

DIOPT Version :9

Sequence 1:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001293680.1 Gene:pmp-4 / 24104835 WormBaseID:WBGene00004061 Length:734 Species:Caenorhabditis elegans


Alignment Length:674 Identity:271/674 - (40%)
Similarity:403/674 - (59%) Gaps:39/674 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 QSAIVGVAGMTA---ALWIIAYGKMSNKKRKPGYEDKIQYTIAEKKDKKAGKAHVNSVFFKQLRQ 73
            ::.:||.||:.|   |.| ::..|......|...||.:......||:||  || .:..|.|||::
 Worm    19 KALLVGAAGVAAVAVAHW-VSLRKSQKSHHKMEKEDSVASDGTPKKNKK--KA-FDPQFLKQLKE 79

  Fly    74 LLPILIPGFWSVETGLLFLVAAALIGRSVSDIWMIQNATVVESTIIHMNRTKFKTALLKY-LTAL 137
            ||.|:|||.:|.|.|::.:.:..||.|:...|::.|....:...|:..|..:|...|:|: |.||
 Worm    80 LLKIMIPGVFSKEAGIIGMHSIILICRTFLTIFVAQLEGSMVQAIVEKNVLQFVLHLVKWILVAL 144

  Fly   138 PAISVVTNVLKWSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQLLTTDIDKFCE 202
            || :.|.:::::....|.|.|||.||.|.|.||.:..|||.:||||.|:.||||.||.||..|.:
 Worm   145 PA-TFVNSMIRFFESYLGLAFRTRLTKHAYKQYFSDQTYYAVSNLDTRLQNADQCLTEDITMFSQ 208

  Fly   203 SATDLYSNISKPVLDIFIYVY---RLTVNLG-GKT---PSILMLYLLFAGVFLTRLRRPT-GRLT 259
            |...|||:::|||||:.:..:   :|.:..| |::   ||.:.:..:.....:.|...|. |.:.
 Worm   209 SVAHLYSHLTKPVLDVALITFTLIKLAIQRGTGRSTFLPSCMAIMAVSLTAKILRAVSPRFGHMV 273

  Fly   260 VEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASYSKLRSHLRKFLEFRVSMGIIDNII 324
            .||.:.:|..||::||:||||||:|||.|:..|...|..:::.|...:....:.|:...:|:..:
 Worm   274 AEEARRKGHLRYLHSRIITNSEEIAFYGGHQAEYKQLDGAFNSLYQQMMLIFKKRIPYIMIEQFL 338

  Fly   325 GKYFASIVGFYAVSIPFFSENHPLLSGENS-----------GQRLQAYYTYGRMLVKLAEAIGRL 378
            .||..|..|...:::|..:..:  ...|.|           .:|.:.|.|...:|...|:|:.||
 Worm   339 MKYVWSGTGMVMIALPILATEY--ADDEKSTKLEDLPDRGVSERTRGYATAKTLLFNSADAVERL 401

  Fly   379 VLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNK--GIMCF 441
            :.:.:|::.|||:|.|:.|:.:|..|..||.|:|..|:    |....|.....|..:|  ||:..
 Worm   402 MTSYKEVTELAGYTGRVHEMFQVFDDAKKGIYQRQTVS----AGAEQGQRGERFDTSKIEGIITD 462

  Fly   442 E--DNIIRFEKVPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVT 504
            .  |.|| ...||:|||||||:::.::..:..|.:||:.|||||||||||||||.|||.:.|.:.
 Worm   463 SEADEII-LNSVPIVTPNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYRGHLE 526

  Fly   505 KPSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDS 569
            ||:..:::|:||||||||||||||:|||.|...|||.|.:|:|||..|.||.|.::.:||.|.|:
 Worm   527 KPTSDRMYYIPQRPYMTLGTLRDQVIYPDTTIQMRRQGITDQDLMTMLRIVHLEHIVEREGGWDA 591

  Fly   570 IEDWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKS 634
            ..||:||||||||||:.|||:|||:|::|:|||||||||:||||.:|...::.||||.||:||.|
 Worm   592 QNDWMDVLSGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSIYQAIKDSGITLLTVTHRPS 656

  Fly   635 LWAHHDYYLQFDGRGSYEFATIDQ 658
            ||..|.:.||:||.|.|:.:::::
 Worm   657 LWKFHTHLLQYDGEGGYKVSSLNE 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 271/667 (41%)
ABC_membrane_2 63..342 CDD:284003 101/287 (35%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 120/204 (59%)
pmp-4NP_001293680.1 3a01203 37..674 CDD:273360 263/647 (41%)
ABC_membrane_2 69..356 CDD:284003 101/287 (35%)
ABCD_peroxisomal_ALDP 468..673 CDD:213190 121/205 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100236
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3716
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.760

Return to query results.
Submit another query.