DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pmp70 and abcd1

DIOPT Version :9

Sequence 1:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_002935559.1 Gene:abcd1 / 100493545 XenbaseID:XB-GENE-953036 Length:744 Species:Xenopus tropicalis


Alignment Length:672 Identity:260/672 - (38%)
Similarity:385/672 - (57%) Gaps:39/672 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ALWIIAYG-------------KMSNKKRKPGYEDKIQYTIAEKKDKKAGKAHVNSVFFKQLRQLL 75
            ||.:.|||             ::....:..|.....:.:.:........:..||..||::|.:||
 Frog    20 ALALAAYGARRIYPLLRHLCLQLQKHPKANGLPGSTEASSSSSSLNSYERTSVNRAFFRRLVRLL 84

  Fly    76 PILIPGFWSVETGLLFLVAAALIGRSVSDIWMIQNATVVESTIIHMNRTKFKTALLKY-LTALPA 139
            .:|.|.....|.|||.|.:||||.|:...:::.|....:...|:......|...|||: |.||||
 Frog    85 RLLFPKLACKEFGLLILHSAALISRTFLSVYVAQLDGRLTRAIVKKRPASFVWQLLKWLLIALPA 149

  Fly   140 ISVVTNVLKWSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQLLTTDIDKFCESA 204
             :.:.:.:::..|:|.|.|||.|..|.|..|....|||::||:|.|:.|.||.||.|:..|..|.
 Frog   150 -TFINSAIRYLEGQLSLAFRTRLVAHAYQLYFGQQTYYRVSNMDGRLRNPDQSLTEDVVAFANSV 213

  Fly   205 TDLYSNISKPVLDIFIYVYRL---TVNLGGKT--PS-ILMLYLLFAGVFLTRLRRPTGRLTVEEQ 263
            ..||||::|||||:.:..|.|   ..:.|..|  || |..|.::.....|.......|:|..||.
 Frog   214 AHLYSNLTKPVLDVVVTTYTLLSTAKSKGANTAWPSTIAGLVVIITAKVLRSCSPKFGKLVAEEA 278

  Fly   264 KLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASYSKLRSHLRKFLEFRVSMGIIDNIIGKYF 328
            :.:||.||::||::.||||:|||.|:..|...|...|..|.|.:...|..|:...:::..:.||.
 Frog   279 RRKGELRYMHSRVVANSEEIAFYGGHKVEMSLLRKCYEDLSSQINIILLERLWYVMLEQFLMKYV 343

  Fly   329 ASIVGFYAVSIPFF-------SENHPLLSG-------ENSGQRLQAYYTYGRMLVKLAEAIGRLV 379
            .|..|...|::|..       |::..:...       |...:|.:|:.|...:|...|:||.|::
 Frog   344 WSASGLVMVAVPIITATGYADSDSEEVKKAAMEMKEEELVSERAEAFTTARNLLTASADAIERVM 408

  Fly   380 LAGREMSRLAGFTARMTELIKVLSDLNKGTYER--TMVNGNNLAQNAVGSASSNFGP--NKGIMC 440
            .:.:|::.|||:|||:.::.:|..|:.||.|:|  .:....:..:..:.......||  .||.:.
 Frog   409 SSYKEVTELAGYTARVHDMFEVFEDVQKGIYKRPGELEEAESKNRGVIQHGIRMEGPLEIKGKVV 473

  Fly   441 FEDNIIRFEKVPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVTK 505
            ..:|.|..|.:|:|||.|||:::.|:.:|:.|.::|:.|||||||||||||||.|||.:.|.:.|
 Frog   474 DVENGIICENIPIVTPTGDVVVERLNIQVEEGMHLLITGPNGCGKSSLFRILGGLWPAYKGVLYK 538

  Fly   506 PSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSI 570
            |....:||:||||||::||||||:|||.|.:||||...:|::|...|:||.|.||.|||.|.||:
 Frog   539 PPPQHMFYIPQRPYMSVGTLRDQVIYPDTAEDMRRKSFTDKNLEAILNIVNLIYLVQREGGWDSV 603

  Fly   571 EDWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKSL 635
            .||.||||||||||:.|||:|||||::|:|||||||||:|||||::...::.||.|.:::||.||
 Frog   604 SDWKDVLSGGEKQRVGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSL 668

  Fly   636 WAHHDYYLQFDGRGSYEFATID 657
            |.:|.:.|||||.|.::|..:|
 Frog   669 WKYHTHLLQFDGEGGWKFEKLD 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 258/666 (39%)
ABC_membrane_2 63..342 CDD:284003 104/285 (36%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 120/204 (59%)
abcd1XP_002935559.1 3a01203 11..686 CDD:273360 258/666 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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