DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pmp70 and abcd4

DIOPT Version :9

Sequence 1:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_002938643.2 Gene:abcd4 / 100493343 XenbaseID:XB-GENE-1006704 Length:614 Species:Xenopus tropicalis


Alignment Length:671 Identity:182/671 - (27%)
Similarity:315/671 - (46%) Gaps:105/671 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 WIIA-YGKMSNKKRKPGYEDKIQYTIAEKKDKKAGKAHVNSVFFKQLRQLLPILIPGFWSVETGL 89
            |::| .|..|.:..:|                   :..::.||.::...|..:|.|. ||.:..|
 Frog     6 WLLANMGARSPRLERP-------------------RPRLDLVFLRRFINLCVVLFPR-WSSQNVL 50

  Fly    90 LF--LVAAALIGRSV-----------------SDIWMIQNATVVESTIIHMNRTKFKTALLKYLT 135
            :|  |:..||.|:.:                 .|:...|:.:::...:|.:|  ....::.:|::
 Frog    51 MFLTLLMVALTGQLLVYQVGILPSQFYGVLADRDLHGFQHLSIIALLLIFLN--SMLCSVEQYVS 113

  Fly   136 ALPAISVVTNVLKWSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQLLTTDIDKF 200
            .|..:|.                |.::|..|:..|.:...||.:|.....|.|.||.:|.|:::.
 Frog   114 KLAYVSC----------------RRDMTGFLHRLYFHNQVYYTLSVEHPHIDNPDQRMTQDVERL 162

  Fly   201 CESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTRLRRPTGRLTVEEQKL 265
            |...:...|.:......:..|.|:..||.|...|..:..|.:...:....|..|.....|:::||
 Frog   163 CRELSSCASQVLTTPFTLVYYSYQCAVNTGWMGPVSIFGYFVVGSLLNKILMGPVIPKLVQQEKL 227

  Fly   266 EGEFRYVNSRLITNSEEVAFYQ-GNVREKLTLLASYSKLRSHLRKFL---------EFRVSMGII 320
            ||:|||.:.::..|:|..|||: |:|        ..|:..|.|:|.:         |..::.|  
 Frog   228 EGDFRYKHVQVRVNAEAAAFYRAGSV--------ELSRTDSRLQKLIVAQKDLINQELWLNFG-- 282

  Fly   321 DNIIGKYFASIVGFYAVSIPFFSENHPLLSGENSGQRL--QAYYTYGRMLVKLAEAIGRLVLAGR 383
            .|.. .|...|:.:..:::|.|:..:..||.....:.:  .|:.:     :.|.....:|:....
 Frog   283 TNTF-NYLGGILSYMIIAVPIFTGMYADLSPAELSELISKNAFVS-----IYLISCFSKLIDLSS 341

  Fly   384 EMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIMCFEDNIIRF 448
            .:..:||:|.|:.||.:|:.||:|         .:|...|.|....:|....:......|..:..
 Frog   342 SLCDVAGYTHRIAELKEVMLDLSK---------SHNCCNNLVEPQDTNSSTLEAKSQSVDPELIL 397

  Fly   449 EKVPLVTPNGD-VLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVTKPSR---- 508
            :.:.:.||..: .|:::||.:|..|:|:|:.|.:|.||||:.|:|..||.|..|:|:..::    
 Frog   398 DNITITTPGSECTLVRDLSLQVCEGSNILITGDSGSGKSSILRVLAGLWETKRGQVSVLTQFGPH 462

  Fly   509 GKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGH-SDEDLMHYLDIVQLTYLEQRENGLDSIED 572
            |.|| :||:|:::.|:||:|:||| .::.....|. .||.::..|::..|..|..|..|||...|
 Frog   463 GVLF-LPQKPFLSDGSLREQVIYP-LKEVYPDSGWVDDERILKSLEMAGLVPLINRTGGLDQKVD 525

  Fly   573 --WIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKSL 635
              |.:|||.||.||:|..||||.:|::|:|||.:||:|...|.|:|..|:|:|:||.:|.||:||
 Frog   526 WNWAEVLSPGEMQRLAFTRLFYLQPKYAVLDEVSSALSEQAEDKLYRGCQELGMTLISVGHRQSL 590

  Fly   636 WAHHDYYLQFDGRGSYEFATI 656
            ...||:.|:....|.:||..|
 Frog   591 QKFHDWELRVGSDGHWEFKRI 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 179/666 (27%)
ABC_membrane_2 63..342 CDD:284003 69/307 (22%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 84/212 (40%)
abcd4XP_002938643.2 3a01203 25..608 CDD:273360 174/628 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X313
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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