DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment parvin and Parvb

DIOPT Version :9

Sequence 1:NP_001285464.1 Gene:parvin / 32990 FlyBaseID:FBgn0052528 Length:367 Species:Drosophila melanogaster
Sequence 2:NP_001128252.1 Gene:Parvb / 362973 RGDID:1311485 Length:365 Species:Rattus norvegicus


Alignment Length:360 Identity:215/360 - (59%)
Similarity:268/360 - (74%) Gaps:3/360 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PKSPHTPTAIKKGEKEDSFWDKF-STLGRKRGTREVKKVQEEGKYAIDSPGSPSQYDIPPEDYAL 70
            |:|| ||.| .|.:|::||..|. .||.||:.||||..:|||||.||:||.:|:..||.|||..|
  Rat     6 PRSP-TPRA-PKMKKDESFLGKLGGTLARKKKTREVTDLQEEGKSAINSPMAPALVDIHPEDTQL 68

  Fly    71 REHEQRAVIDPQSISDPQVIKLQRILVDWINDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKK 135
            .|:|:|.:|||.|..||:..:|.::|:|||||.|||:||||:.||||:||||||.||.|||...|
  Rat    69 EENEERTMIDPTSREDPKFKELVKVLLDWINDVLAEERIIVKQLEEDLYDGQVLQKLLEKLAHCK 133

  Fly   136 LDVPEVTQSEQGQHEKLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV 200
            |:|.||||||.||.:||..||:||...|..|....:|:|.|:|.||:|:||||||:|..|||||:
  Rat   134 LNVAEVTQSEIGQKQKLQTVLEAVQDLLRPHGWPLRWNVDSIHGKNLVSILHLLVSLAMHFRAPI 198

  Fly   201 RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLIDCAPDKLAVVKKSLIT 265
            .|||:|.|.||:..|..|:|::....|::|:..:.:..|.|:||||||.|.|||||.:|||||||
  Rat   199 HLPEHVTVQVVVVRKREGLLHSSHISEELTTTTEIMMGRFERDAFDTLFDHAPDKLNLVKKSLIT 263

  Fly   266 FVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGGFFVPLHEFHLTPQDVDQMVSNVAFAFDLMQ 330
            ||||||.|||.|::||.|.|.|||||.||:|||..:|||||.|:|||...||.|.||||||:||.
  Rat   264 FVNKHLNKLNLEVTDLETQFADGVYLVLLLGLLEDYFVPLHNFYLTPDSFDQKVHNVAFAFELML 328

  Fly   331 DVGLPKPKARPEDIVNMDLKSTLRVLYSLFTMFRD 365
            |.||.||||||||:||:||||||||||:|||.::|
  Rat   329 DGGLKKPKARPEDVVNLDLKSTLRVLYTLFTKYKD 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
parvinNP_001285464.1 CH 92..192 CDD:278723 61/99 (62%)
CH 258..359 CDD:278723 74/100 (74%)
ParvbNP_001128252.1 CH 89..190 CDD:278723 61/100 (61%)
CH 257..357 CDD:278723 74/99 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339056
Domainoid 1 1.000 158 1.000 Domainoid score I4019
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8342
Inparanoid 1 1.050 404 1.000 Inparanoid score I1847
OMA 1 1.010 - - QHG52959
OrthoDB 1 1.010 - - D373611at33208
OrthoFinder 1 1.000 - - FOG0002943
OrthoInspector 1 1.000 - - otm44959
orthoMCL 1 0.900 - - OOG6_105758
Panther 1 1.100 - - LDO PTHR12114
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1944
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.910

Return to query results.
Submit another query.