DRSC/TRiP Functional Genomics Resources

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Protein Alignment parvin and Sptbn5

DIOPT Version :9

Sequence 1:NP_001285464.1 Gene:parvin / 32990 FlyBaseID:FBgn0052528 Length:367 Species:Drosophila melanogaster
Sequence 2:XP_038962422.1 Gene:Sptbn5 / 296090 RGDID:1311047 Length:3602 Species:Rattus norvegicus


Alignment Length:258 Identity:54/258 - (20%)
Similarity:99/258 - (38%) Gaps:79/258 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 QRILVDWIND--ELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHEKLNI- 154
            ::..::|||:  .|....|.:|:|..::.||..|.:|.|.::|:.|..|        ...:|.: 
  Rat    78 EKTFINWINNIFRLGRVGIRIQNLYTELADGAHLLRLLELISGEALPAP--------SPGRLRVH 134

  Fly   155 VLKAVNHTLGF-HQKIPKWSVASVHSKNIV-----AILHLLVALVRHFRAPVRLPENVFVTVVIA 213
            .|:..:|.|.| ..|:|   |..:..:|||     .||.||..::..|:.               
  Rat   135 FLENNSHALAFLRAKVP---VPFIGPENIVDGDQSLILGLLWVIILRFQI--------------- 181

  Fly   214 EKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLIDCAPDKLAVVKKSLITFVNKHLAKL-NFE 277
                         ..|:.:.::.|              |...|...|::|:.:..:..|.. |.:
  Rat   182 -------------SHISLDREEFG--------------ASAALLSAKEALLVWCQRQTASYSNVD 219

  Fly   278 ISDLNTDFRDGVYLCLLMGLLGGFFVPLHEFHLTPQD-----VDQMVSNVAFAFDLM-QDVGL 334
            |:|.:..:.||:          .|...||.......|     :|:.:.|::|||.:. |.:|:
  Rat   220 ITDFSRSWSDGL----------AFNALLHAHRPDLLDYGSLSLDRPLYNLSFAFRVAEQQLGI 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
parvinNP_001285464.1 CH 92..192 CDD:278723 30/107 (28%)
CH 258..359 CDD:278723 19/84 (23%)
Sptbn5XP_038962422.1 CH_SPTBN5_rpt1 57..181 CDD:409096 31/113 (27%)
CH_SF 196..304 CDD:412120 20/87 (23%)
SPEC 331..548 CDD:413338
SPEC 448..660 CDD:238103
SPEC 664..>831 CDD:238103
SPEC 770..1018 CDD:238103
SPEC 1126..1222 CDD:197544
SPEC 1227..1432 CDD:238103
SPEC 1333..1534 CDD:238103
SPEC 1536..1738 CDD:238103
SPEC 1742..1953 CDD:238103
SPEC 1852..2058 CDD:238103
SPEC 2059..2262 CDD:238103
SPEC 2163..2368 CDD:238103
SPEC 2371..2566 CDD:238103
SPEC 2472..2681 CDD:238103
SPEC 2684..2894 CDD:238103
SPEC 2895..3106 CDD:238103
SPEC 3001..3213 CDD:238103
Spectrin 3213..3320 CDD:395348
SPEC 3325..>3488 CDD:238103
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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