DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-1-2beta and SEC26

DIOPT Version :9

Sequence 1:NP_523415.1 Gene:AP-1-2beta / 32987 FlyBaseID:FBgn0010380 Length:921 Species:Drosophila melanogaster
Sequence 2:NP_010524.3 Gene:SEC26 / 851824 SGDID:S000002646 Length:973 Species:Saccharomyces cerevisiae


Alignment Length:583 Identity:133/583 - (22%)
Similarity:235/583 - (40%) Gaps:99/583 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ELKSELNNDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLY------LM 74
            :.:..|.....|:|.:.:|.::.:|..|..:..|...::. .|.:.|.|||||:|.|      |.
Yeast    27 DFQKALEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLA 91

  Fly    75 NYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRK 139
            ...|.:.:| |:..|....|.:..|..||...:|.:..:|..::.|.:...:..||:....||||
Yeast    92 EDGKLRHEM-ILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYRHAYVRK 155

  Fly   140 TAAVCVAKLYDISATMVEDQGFLDQLKDLL-----SDSNPMVVANAVAALSEINEASQSGQPLVE 199
            .|.:.|..::.:|..::.|      .|:::     ::::|:...||...|:|::.  ::....:|
Yeast   156 YAILAVFSIFKVSEHLLPD------AKEIINSFIVAETDPICKRNAFIGLAELDR--ENALHYLE 212

  Fly   200 MNSVTINKLLTALNECTEWGQVFILDSLANYSPKDEREAQSICERITPRLAHANAAVVLSAVKVL 264
            .|...|..                ||.|          .|::..:...:.|:...|:....:::|
Yeast   213 NNIADIEN----------------LDPL----------LQAVFVQFIRQDANRTPALKAQYIELL 251

  Fly   265 MKLLEMLSSDSDFCATLTKKLAPPLVTLLSSEPEVQYVAL------------RNINLIVQKR-PD 316
            |:||...:||.....|   .||   :|:||:.|.|...|:            .||.|||..| .|
Yeast   252 MELLSTTTSDEVIFET---ALA---LTVLSANPNVLVPAVNKLIDLAVKVSDNNIKLIVLDRIQD 310

  Fly   317 ILKHE--------MKVFFVKYNDPIYVKLEKLDIMIRLANQSNIAQVLSEL-KEYATEVD----- 367
            |..:.        :.:..|...:.:.|:.:.|||.:.||...|...|:..| ||..|.|:     
Yeast   311 INANNVGALEELTLDILRVLNAEDLDVRSKALDISMDLATSRNAEDVVQLLKKELQTTVNNPDQD 375

  Fly   368 --VDFVRKAVRAIGRCAIKVEPSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESII 430
              :.:.:..::.|...|:.....|...||.|||.|....:......|..||::..|||....:|:
Yeast   376 KAMQYRQLLIKTIRTVAVNFVEMAASVVSLLLDFIGDLNSVAASGIIAFIKEVIEKYPQLRANIL 440

  Fly   431 STLCENLDTLDEPEARASMVWIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFLK 495
            ..:.:.||.:...:|....:||:|||||............      .|:..::.:|.:.:|...:
Yeast   441 ENMVQTLDKVRSAKAYRGALWIMGEYAEGESEIQHCWKHI------RNSVGEVPILQSEIKKLTQ 499

  Fly   496 RPSDTQELVQHVLSLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKPLISEETDLLEP 558
            ....|:|....    ||.....|.:...|     ..:|:  :|.:|..:.|.:..||.|...|
Yeast   500 NQEHTEENEVD----ATAKPTGPVILPDG-----TYATE--SAFDVKTSQKSVTDEERDSRPP 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1-2betaNP_523415.1 Adaptin_N 38..535 CDD:279882 122/537 (23%)
HEAT repeat 51..75 CDD:293787 10/30 (33%)
HEAT repeat 87..114 CDD:293787 6/26 (23%)
Cnd1 99..269 CDD:289487 34/174 (20%)
HEAT repeat 121..151 CDD:293787 8/29 (28%)
HEAT repeat 160..186 CDD:293787 5/30 (17%)
HEAT repeat 197..229 CDD:293787 6/31 (19%)
HEAT repeat 393..417 CDD:293787 8/23 (35%)
HEAT repeat 429..458 CDD:293787 9/28 (32%)
HEAT repeat 465..495 CDD:293787 3/29 (10%)
HEAT repeat 506..542 CDD:293787 6/35 (17%)
Alpha_adaptinC2 703..799 CDD:197886
B2-adapt-app_C 809..919 CDD:198088
SEC26NP_010524.3 COG5096 1..941 CDD:227427 133/583 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5096
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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