DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment AP-1-2beta and Ap3b2

DIOPT Version :9

Sequence 1:	NP_523415.1	Gene:	AP-1-2beta / 32987	FlyBaseID:	FBgn0010380	Length:	921	Species:	Drosophila melanogaster
Sequence 2:	XP_006540634.1	Gene:	Ap3b2 / 11775	MGIID:	1100869	Length:	1101	Species:	Mus musculus

Alignment Length:	1131	Identity:	280/1131 - (24%)
Similarity:	454/1131 - (40%)	Gaps:	281/1131 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 DSKYFTTTKKGEIF--------ELKSELNNDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQ 59
            :.:|......|.||        :||..|:.:|...|.||:|:::|.:..||:.|.|||.||..:.
Mouse    19 EPEYGHDPASGGIFSSDYKRHDDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKNVA 83

  Fly    60 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCE 124
            ..|:|:|||||:||:.||:.|.|:|:::::||.:..:|.|.||||.|:|.:..|||..|...:..
Mouse    84 CKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMML 148

  Fly   125 PLRKCLKDEDPYVRKTAAVCVAKLYDISATMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINE 189
            .:::...|..||||||||..:.|||.:.:.. :|| .::.::.||:|...:|..:.|.|..|:..
Mouse   149 AIKEAASDMSPYVRKTAAHAIPKLYSLDSDQ-KDQ-LIEVIEKLLADKTTLVAGSVVMAFEEVCP 211

  Fly   190 ASQSGQPLVEMNSVTINKLLTALNECTEWGQVFILDSLANY------------------------ 230
            ..      :::......||...|.:..|||||.|:..|..|
Mouse   212 ER------IDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRYARTQFLSPTQNESLLEENPEKAFY 270

  Fly   231 -SPKDEREAQSICERIT-----------------------PRLAHANAAVVLSAVKVLMKLLEML 271
             |.:||.:.....|..|                       |.|...:||||::..::...|....
Mouse   271 GSEEDEAKGPGSEEAATAALPARKPYVMDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKA 335

  Fly   272 SSDSDFCATLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVK 336
            .         ...:|..||.||.|..|||||.|:|:..:..||..:.:..:|.|:::..||..:|
Mouse   336 E---------VGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIK 391

  Fly   337 LEKLDIMIRLANQSNIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEPSAERCVSTLLDLIQ 401
            :.||:::..|||::||..||.|.:.|...:|.|||...::||||||..:....:.|::.|:.|:.
Mouse   392 ILKLEVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLS 456

  Fly   402 TKVNYVVQEAIVVIKDIFRKYPNKYESIISTLCENLDTLDEPEARASMVWIIGEYAERIDN-ADE 465
            .:...||.|::||||.:.:..|.::..||..|.:..|.:..|.||||::|:||||.|.:.. |.:
Mouse   457 NRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTDNIQVPMARASILWLIGEYCEHVPKIAPD 521

  Fly   466 LLDSFLEGFQDENAQVQLQLLTAVVKLFLKRPSDTQELVQHVLSLATQDSDNPDLRDRGFIYWRL 530
            :|....:.|..|...|:||::....||:|.....|:.|.|:|||||..| .|.|:|||.....:|
Mouse   522 VLRKMAKSFTAEEDIVKLQVINLAAKLYLTNSKQTKLLTQYVLSLAKYD-QNYDIRDRARFTRQL 585

  Fly   531 L--STDPAA----AKEVVLADKP---------------------LIS------------------ 550
            :  |....|    ||::.||.||                     |::
Mouse   586 IVPSEQGGALSRHAKKLFLAPKPAPILESSFKDRDHFQLGSLSHLLNAKATGYQELPDWPEEAPD 650

  Fly   551 ------EETDLLEPTLLDELICHISSLASVYHKP---------------------------PTAF 582
                  ||.||   :|::   .|:..|......|                           ||..
Mouse   651 PSVRNVEEEDL---SLIE---THVGLLGEYTEVPEWTKCSNREKRKEKEKPFYSDSEGESGPTES 709

  Fly   583 VEGRGAGVRKSLPNRAAGSAAG---------AEQAENAAGSEA---------------------- 616
            .:.......:|....::||.:|         .|..|...|||:
Mouse   710 ADSEPESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEEDEKKKKTKKKKASEGH 774

  Fly   617 -------------------MVIPNQESLIGDLLSMDINAPAMPSAPAATSNVDLLGGGLDILLGG 662
                               :...::|..:..........|...|||.| ..:.|    ||:....
Mouse   775 REGSSSEEGSDSSSSSESEVTSESEEEQVEPASWRKKTPPGSKSAPVA-KEISL----LDLEDFT 834

  Fly   663 PPA--EAAPG--GATSLLGDIFGLGGATLSVGVQIPKV----------TWLPAEKGKGLEIQGTF 713
            ||:  ..:|.  .:|||..|:.||   ||:....:|.:          ..|....|:||.:...|
Mouse   835 PPSVQPVSPPMVVSTSLAADLEGL---TLTDSSLVPSLLSPVSSIGRQELLHRVAGEGLSVDYAF 896

  Fly   714 SRR--NGE---VFMDMTLTNKAMQPMTNFAIQLNKNSFGLVPASPMQAAPLPPNQSIEVSMALGT 773
            ||:  :|:   |.:.:..:|.:..|:....:...|...|:......:...|.|.:|....|.:..
Mouse   897 SRQPFSGDPHMVSLHIYFSNNSETPIKGLHVGTPKLPAGISIQEFPEIESLAPGESTTTVMGINF 961

  Fly   774 NGPIQRMEPLNNLQVAVKNNIDIFYFACLVHGNVLFAEDGQLDKRVFL--NTWK----EIPAANE 832
            ....|..    |.|:..:..  .||.:       :....|:|...||:  |.:|    ::...||
Mouse   962 CDSTQAA----NFQLCTQTR--QFYVS-------IQPPVGELMAPVFMSENEFKKEQGKLTGMNE 1013

  Fly   833 L--QYTLSGVIGTTDGIASKMT-----------TNNIFTIAKRNVEGQDMLYQSLKLTNNIWVLL 884
            :  :.||.....:...:..|:|           |::.:..|.|.            ||:...|||
Mouse  1014 ITEKLTLPDTCRSDHMVVQKVTATANLGRVPCGTSDEYRFAGRT------------LTSGSLVLL 1066

  Fly   885 ELKLQPGNPEATLSLKSRSVEVANII 910
            .|..:... .|.|::.|..:.:..::
Mouse  1067 TLDARAAG-AAQLTVNSEKMVIGTML 1091

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
AP-1-2beta	NP_523415.1	Adaptin_N	38..535	CDD:279882	174/547 (32%)
		HEAT repeat	51..75	CDD:293787	13/23 (57%)
		HEAT repeat	87..114	CDD:293787	10/26 (38%)
		Cnd1	99..269	CDD:289487	55/217 (25%)
		HEAT repeat	121..151	CDD:293787	12/29 (41%)
		HEAT repeat	160..186	CDD:293787	6/25 (24%)
		HEAT repeat	197..229	CDD:293787	10/31 (32%)
		HEAT repeat	393..417	CDD:293787	8/23 (35%)
		HEAT repeat	429..458	CDD:293787	14/28 (50%)
		HEAT repeat	465..495	CDD:293787	8/29 (28%)
		HEAT repeat	506..542	CDD:293787	16/41 (39%)
		Alpha_adaptinC2	703..799	CDD:197886	20/100 (20%)
		B2-adapt-app_C	809..919	CDD:198088	24/121 (20%)
Ap3b2	XP_006540634.1	Adaptin_N	34..590	CDD:366724	181/573 (32%)
		HEAT repeat	111..139	CDD:293787	11/27 (41%)
		HEAT repeat	145..173	CDD:293787	10/27 (37%)
		HEAT repeat	182..208	CDD:293787	7/26 (27%)
		AP3B1_C	823..966	CDD:373301	32/149 (21%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5096
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D323029at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820