DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-1-2beta and copb1

DIOPT Version :9

Sequence 1:NP_523415.1 Gene:AP-1-2beta / 32987 FlyBaseID:FBgn0010380 Length:921 Species:Drosophila melanogaster
Sequence 2:NP_001135674.1 Gene:copb1 / 100216235 XenbaseID:XB-GENE-975104 Length:953 Species:Xenopus tropicalis


Alignment Length:1055 Identity:198/1055 - (18%)
Similarity:370/1055 - (35%) Gaps:308/1055 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LKSELNNDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQP 81
            ||::|.....:.|.||:||||..:..|:.:..|...::. .:...:..:|||:.::.....|:.|
 Frog    26 LKADLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTP 90

  Fly    82 D-----MAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTA 141
            |     ..|:..:.:.||.:..|..||...:|.:..::..::.|.|...:|.||:....|||:.|
 Frog    91 DGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNA 155

  Fly   142 AVCVAKLYDISATMVED-----QGFLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEMN 201
            .:.:..:|.....::.|     ..||...||.....|         |...:..|.|         
 Frog   156 VLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRN---------AFMMLIHADQ--------- 202

  Fly   202 SVTINKLLTALNECTEWGQVF--ILDSLANYSPKDEREAQSICERITPRLAHANAAVVLSAVKVL 264
                ::.|..|:.|.:..|.|  ||              |.:...:..::.|||.:.....::.:
 Frog   203 ----DRALDYLSTCIDQVQTFGDIL--------------QLVIVELIYKVCHANPSERARFIRCI 249

  Fly   265 MKLLEMLSSDSDFCATLTKKLAPPLVTLLSSEPEVQ-----YVAL------RNINLIVQKRPDIL 318
            ..||:..|      ..:..:.|..||||.|:...::     |:.|      .|:.|||..|...|
 Frog   250 YNLLQSSS------PAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVEL 308

  Fly   319 K----HE-------MKVFFVKYNDPIYVKLEKLDIMIRLANQSNIAQVLSELKEYATEV------ 366
            |    ||       |.:..|.....:.|:.:.|.:.:.|.:..|:.:::..||:...:.      
 Frog   309 KDHPSHERVLQDLVMDILRVLSTPDLEVRKKTLQLALELVSSRNVEELVIVLKKEVIKTNNVTEH 373

  Fly   367 -DVDFVRK-AVRAIGRCAIKVEPSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESI 429
             |.|..|: .||.:..|:::....|...:..|::.:.........:.:..:::..:::.|....|
 Frog   374 EDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAVQRFDNLRPLI 438

  Fly   430 ISTLCENLDTLDEPEARASMVWIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFL 494
            :..:.|....:...:...:.:||:|||....::.:.::........:          ..:|:..|
 Frog   439 VEKMLEVFHAIKSVKIYRAALWILGEYCSTKEDINSVMTEVRRSLGE----------VPIVETEL 493

  Fly   495 KRPS------------DTQELVQHVLSLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKP 547
            |:.|            .||:||..:.:..||.:               ||:...|.||       
 Frog   494 KKESGELKPEEDVTVGPTQKLVTEMGTYPTQSA---------------LSSSRPAKKE------- 536

  Fly   548 LISEETDLLEPTLLDELICHISSLASVYHKPPTAFVEGRGAGVRKSLPNRAAGSAAGAEQAENAA 612
               ||...|...|||......:|||:...|....:|                 :....::.:|:.
 Frog   537 ---EERPPLRGFLLDGDFYVAASLATTLTKIALRYV-----------------ALVQEKRKQNSF 581

  Fly   613 GSEAMVIPNQESLIGDLLSMDINAPAMPSAPAATSNVDLLGGGLDILLGGPPAEAAPGGATSLLG 677
            .:|||:      |:..:|  .:...::|..|....:||.:...|.:|     :|.:|     |:.
 Frog   582 VAEAML------LMATIL--HLGKSSLPKKPITDDDVDRISLCLKVL-----SECSP-----LMN 628

  Fly   678 DIFGLG-----GATLSVGVQIPKVTWLPAEKGKGLEIQGTFSRRNGEVFMDMTLTNKAMQPMTNF 737
            :||...     ...||..::..|::.....:.:.:.:|..    :...||.:|..|:.......|
 Frog   629 EIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPD----DPISFMQLTAKNETASKEDQF 689

  Fly   738 --------------------AIQLNK-------------------NSFGLVPASPMQAAPLPPNQ 763
                                |.:|||                   |.:.:|      ...|..||
 Frog   690 QLSLLAAMGTTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIV------LDVLVVNQ 748

  Fly   764 SIEV----SMALGTNGPIQRME---PLN-----------NLQVAVKNNIDIFYFACLVHGNVLFA 810
            :.:.    ::.|.|.|.::.:|   ||.           |::||...|..||       ||:::.
 Frog   749 TGDTLQSCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIF-------GNIVYD 806

  Fly   811 EDGQLDKR------------------------VFLNTWKEIPAAN---------ELQYTLSGVIG 842
            ..|....|                        .|...|.|....|         :|...|..::.
 Frog   807 VSGAASDRNCVVLSDIHIDIMDYIQPASCTDTEFRQMWAEFEWENKVTVNTNITDLNEYLQHILK 871

  Fly   843 TTD-----------GIASKMTTNNIFTIAKRNVEGQDMLYQSLKLTNNIWVLLELKLQPGNPEAT 896
            :|:           |....|..|    :..|::.|:|.|..         |.:|..:..| |||.
 Frog   872 STNMKCLTPEKALSGYCGFMAAN----LYARSIFGEDALAN---------VSIEKPIHLG-PEAP 922

  Fly   897 LS----LKSRSVEVA 907
            ::    ::::|..:|
 Frog   923 VTGHIRIRAKSQGMA 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1-2betaNP_523415.1 Adaptin_N 38..535 CDD:279882 102/551 (19%)
HEAT repeat 51..75 CDD:293787 3/24 (13%)
HEAT repeat 87..114 CDD:293787 6/26 (23%)
Cnd1 99..269 CDD:289487 35/176 (20%)
HEAT repeat 121..151 CDD:293787 9/29 (31%)
HEAT repeat 160..186 CDD:293787 6/25 (24%)
HEAT repeat 197..229 CDD:293787 7/33 (21%)
HEAT repeat 393..417 CDD:293787 1/23 (4%)
HEAT repeat 429..458 CDD:293787 7/28 (25%)
HEAT repeat 465..495 CDD:293787 1/29 (3%)
HEAT repeat 506..542 CDD:293787 7/35 (20%)
Alpha_adaptinC2 703..799 CDD:197886 27/152 (18%)
B2-adapt-app_C 809..919 CDD:198088 24/147 (16%)
copb1NP_001135674.1 Adaptin_N 26..550 CDD:279882 120/600 (20%)
HEAT repeat 137..161 CDD:293787 7/23 (30%)
HEAT repeat 173..211 CDD:293787 10/59 (17%)
HEAT repeat 221..272 CDD:293787 13/70 (19%)
HEAT repeat 280..307 CDD:293787 7/26 (27%)
HEAT repeat 318..342 CDD:293787 3/23 (13%)
Coatamer_beta_C 667..807 CDD:285019 28/156 (18%)
Coatomer_b_Cpla 816..944 CDD:291472 22/136 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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