DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-1-2beta and ap3b2

DIOPT Version :9

Sequence 1:NP_523415.1 Gene:AP-1-2beta / 32987 FlyBaseID:FBgn0010380 Length:921 Species:Drosophila melanogaster
Sequence 2:XP_031753531.1 Gene:ap3b2 / 100158619 XenbaseID:XB-GENE-1013377 Length:1175 Species:Xenopus tropicalis


Alignment Length:1165 Identity:278/1165 - (23%)
Similarity:459/1165 - (39%) Gaps:344/1165 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ELKSELNNDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP 81
            :||..|:::|...|.||:|:::|.:..||:.|.|||.||..:...|:|:|||||:||:.||:.|.
 Frog    74 DLKEMLDSNKDSLKLEAMKRIVAMIARGKNTSDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQ 138

  Fly    82 DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
            |:|:::::||.:..:|.|.||||.|:|.:..|||..|...:...:::...|..||||||||..:.
 Frog   139 DLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIP 203

  Fly   147 KLYDISATMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEMNSVTINKLLTA 211
            |||.:.:.. :|| .::.::.||||...:|..:.|.|..|:....      :::......||...
 Frog   204 KLYSLDSDQ-KDQ-LIEVIEKLLSDKTTLVAGSVVMAFEEVCPER------IDLIHKNYRKLCNL 260

  Fly   212 LNECTEWGQVFILDSLANYS------------------------------PKDEREAQS------ 240
            |.:..|||||.|::.|..|:                              .|::.|..|      
 Frog   261 LIDVEEWGQVVIINMLTRYARTQFLNPNQNESLLEENPEKAFYGSDDDEGGKEKSEPSSMVKHKP 325

  Fly   241 ---------ICERITPRLAHANAAVVLSAVKVLMKLLEMLSSDSDFCATLTKKLAPPLVTLLSSE 296
                     :.....|.|...|||||::..::...|.....         ...:|..||.||.|.
 Frog   326 YVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAE---------VGVIAKALVRLLRSH 381

  Fly   297 PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLANQSNIAQVLSELKE 361
            .|||||.|.|:..:..||..:.:..:|.|:::..||..:|:.||:::..|||::||:.:|.|.:.
 Frog   382 SEVQYVVLHNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQT 446

  Fly   362 YATEVDVDFVRKAVRAIGRCAIKVEPSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKY 426
            |...:|.|||...::||||||..:....:.|::.|:.|:..:...||.|::||||.:.:..|.::
 Frog   447 YIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQH 511

  Fly   427 ESIISTLCENLDTLDEPEARASMVWIIGEYAERIDN-ADELLDSFLEGFQDENAQVQLQLLTAVV 490
            ..||..:.:..|.:..|.||||::|:||||.|.:.. |.::|....:.|.:|...|:||.:....
 Frog   512 SEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQTINLAA 576

  Fly   491 KLFLKRPSDTQELVQHVLSLATQDSDNPDLRDR-GFIYWRLLSTDPAA-----AKEVVLADKPLI 549
            ||:|..|..|:.|.|:||:||..| .|.|:||| .||...::.|:.:.     ||::.||.||  
 Frog   577 KLYLTNPKQTKLLTQYVLNLAKYD-QNYDIRDRTRFIRQLIIPTEKSGALSKHAKKLFLAQKP-- 638

  Fly   550 SEETDLLEPTLLDE------LICHISSLASVYHK-----------PPTAFVEGRGA--------- 588
               ..:||.:..|.      .:.|:.:..:|.::           |....||.:.|         
 Frog   639 ---APILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPEEAPDPSVRNVEVKDAEEEEDSAPR 700

  Fly   589 -------GVRKSLP------------------------------------------------NRA 598
                   |..|.:|                                                :..
 Frog   701 DGHIGLLGEWKEVPEWTKCPSREKRKEREEKPFYSDSEGESGPTESADSEPESESESESGGNSSG 765

  Fly   599 AGSAAGAEQ-----------------------------------------------------AEN 610
            :||.:|:|:                                                     :|:
 Frog   766 SGSGSGSEEEEESEEEEESEKEEKKKEKKRTPQKEDSDESDQEQKQPIRSKRSSAKTSQKSASED 830

  Fly   611 AAGSE------------------------------------------AMVIPNQESLIGDLLSMD 633
            .:.||                                          |...|.:.||      :|
 Frog   831 GSSSESNESETESSSEEEDEDEDEEDEQRQSDPKKKKTPPATKPTAKASKEPKEMSL------LD 889

  Fly   634 INAPAMPSAPAATSNVDLLGGGLDILLGGPPAEAAPGGATSLLGDIFGLGGATLSVGVQIPKV-- 696
            ::..::||||..||...:                    :.||:.|:.||   :|:.....|.|  
 Frog   890 LDDFSVPSAPLVTSRSIV--------------------SASLVSDLEGL---SLTDSALTPTVIS 931

  Fly   697 ---------TWLPAEKGKGLEIQGTFSRR-----NGEVFMDMTLTNKAMQPMTNFAIQLNKNSFG 747
                     ..|....|:||.::..|||:     |..|.:.:.::||....:.|..|...|...|
 Frog   932 PAFASDRTFELLHRMTGEGLSMEYIFSRQPFTPDNRMVSVQIQISNKTENEVKNIRISEPKLLSG 996

  Fly   748 LVPASPMQAAPLPPNQSIEVSMALGTNGPIQRMEPLNNLQVAVKNNIDIFYFACLVHGNVLFAED 812
            :......:...|||.:|..|.|.:......|..    |.|:.....    :|...:...|     
 Frog   997 MRIKEFQETECLPPGESATVIMGIDFCDSTQAA----NFQICTHTR----HFYVSIQPPV----- 1048

  Fly   813 GQLDKRVFLNTWKEIPAANEL---QYTLSGVIGTTDGIASKMTTNNIFTIAKR-----NVE---- 865
            |:|...||:       :.||.   |..|:|:...|:.::.....|:...|.:|     |:.    
 Frog  1049 GELMAPVFM-------SENEFKREQSKLTGMNEITERLSLSEKCNSDHAIVQRVTSTANMNRVPC 1106

  Fly   866 GQDMLYQSLKLT---------------NNIWVLLELKLQPGNPEATLSLKSRSVEVANII 910
            |.|..|....||               :...||:.|.|:.|: .|.|::.|..:.:..::
 Frog  1107 GADKEYSDPALTFERPTCLRFAAKTVSSGTLVLVTLTLKDGS-AALLTINSEKMVIGTML 1165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1-2betaNP_523415.1 Adaptin_N 38..535 CDD:279882 173/543 (32%)
HEAT repeat 51..75 CDD:293787 13/23 (57%)
HEAT repeat 87..114 CDD:293787 10/26 (38%)
Cnd1 99..269 CDD:289487 55/214 (26%)
HEAT repeat 121..151 CDD:293787 12/29 (41%)
HEAT repeat 160..186 CDD:293787 7/25 (28%)
HEAT repeat 197..229 CDD:293787 10/31 (32%)
HEAT repeat 393..417 CDD:293787 8/23 (35%)
HEAT repeat 429..458 CDD:293787 13/28 (46%)
HEAT repeat 465..495 CDD:293787 8/29 (28%)
HEAT repeat 506..542 CDD:293787 15/41 (37%)
Alpha_adaptinC2 703..799 CDD:197886 23/100 (23%)
B2-adapt-app_C 809..919 CDD:198088 27/129 (21%)
ap3b2XP_031753531.1 Adaptin_N 68..620 CDD:396262 180/563 (32%)
HEAT repeat 144..172 CDD:293787 11/27 (41%)
HEAT repeat 178..206 CDD:293787 10/27 (37%)
HEAT repeat 215..241 CDD:293787 8/26 (31%)
AP3B1_C 882..1027 CDD:405483 39/173 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323029at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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