DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc42 and rnd3a

DIOPT Version :10

Sequence 1:NP_523414.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_955816.1 Gene:rnd3a / 80963 ZFINID:ZDB-GENE-010319-40 Length:243 Species:Danio rerio


Alignment Length:188 Identity:76/188 - (40%)
Similarity:116/188 - (61%) Gaps:4/188 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
            |::||  |||||...|||.||..:..:.||..||||||:||..:..|..:...|.|:||:|...|
Zfish    20 QSLKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDKQRIELSLWDTSGSPYY 84

  Fly    65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKL 129
            |.:||||||.:|..::||.:..|.:.::|.:||..||...|..|..||||.:.|||.:.:||.:|
Zfish    85 DNVRPLSYPDSDAVIICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVEL 149

  Fly   130 AKNKQKPITMEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEAILAALEPPEPTKKR 186
            :.::|.|::.:||..:||::.| .|:||||: ::..::::|..|.||.:.......||
Zfish   150 SNHRQTPVSYDQGSAMAKQISA-PYIECSAVQSENSVRDIFHVATLACVNKNNKNIKR 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_523414.1 Cdc42 3..177 CDD:206664 73/176 (41%)
rnd3aNP_955816.1 Rnd3_RhoE_Rho8 19..197 CDD:206735 74/177 (42%)

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