DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc42 and Rhobtb3

DIOPT Version :10

Sequence 1:NP_523414.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_082769.1 Gene:Rhobtb3 / 73296 MGIID:1920546 Length:611 Species:Mus musculus


Alignment Length:193 Identity:52/193 - (26%)
Similarity:89/193 - (46%) Gaps:27/193 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP 69
            :|.||.:   :.||.:.:|...|  :||..:.|.|  |.:::...| ...:||:    |:...|.
Mouse    34 LVSGDES---SLLLNAASTVARPVFTEYQASAFGN--VKLVVHDCP-VWDIFDS----DWYTSRN 88

  Fly    70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLL--VGTQIDLRDEN--STLEKLA 130
            | ....|:.::.::|....||..||:.::|.|.......|.::  |||:   ::|.  .|.....
Mouse    89 L-IGGADIIVIKYNVNDKFSFHEVKDNYIPVIKRASNSVPVIIAAVGTR---QNEELPCTCPLCT 149

  Fly   131 KNKQKPITMEQGEKLAKELKAVKYVECSALTQ----KGLKNVFDEAILAAL--EPPEPTKKRK 187
            .::...:|..:|.:|||||.|. |:|..:|..    |....|.:..::.||  :..|..||||
Mouse   150 SDRGSCVTTTEGIQLAKELGAT-YLELHSLDDFYIGKYFGGVLEYFMIQALNQKTSEKMKKRK 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_523414.1 Cdc42 3..177 CDD:206664 45/179 (25%)
Rhobtb3NP_082769.1 Rho-like 1..175 41/155 (26%)
P-loop containing Nucleoside Triphosphate Hydrolases 34..174 CDD:476819 41/154 (27%)
BTB1_POZ_RHOBTB3 236..393 CDD:349666
BTB2_POZ_RHOBTB3 410..519 CDD:349669
Interaction with Rab9. /evidence=ECO:0000250 420..611
BACK_RHOBTB3 529..611 CDD:350607
Blue background indicates that the domain is not in the aligned region.

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