DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc42 and rhobtb3

DIOPT Version :9

Sequence 1:NP_001245762.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:XP_691270.6 Gene:rhobtb3 / 562804 ZFINID:ZDB-GENE-091204-190 Length:619 Species:Danio rerio


Alignment Length:181 Identity:40/181 - (22%)
Similarity:73/181 - (40%) Gaps:25/181 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SYTTNKFP-----SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81
            |.|.::.|     .||...|..:  |.||:...| :..:.|:    |:..:|.: ..|.|:.::.
Zfish    48 SMTPSRHPLNPAFMEYQSRVMGD--VRVMVRDCP-SWDILDS----DWVSVRSI-LEQADIVVIK 104

  Fly    82 FSVVSPSSFENVKEKWVPEITHHCQK--TPFLLVGTQIDLRDEN--STLEKLAKNKQKPITMEQG 142
            :||....:|:.|:..:.|.:....:.  .|.:||.....|.||.  .|....|.:....:...:|
Zfish   105 YSVNDKLAFQQVRNGYAPRLRPLLRHWGVPVILVAVGARLNDEGPPCTCPLCASDWSSCVPHSEG 169

  Fly   143 EKLAKELKAVKYVECSALTQKGLKNVFDEAI-------LAALEPPEPTKKR 186
            .:|:::|.|. |:|..:|....:...|...:       |.......|.|:|
Zfish   170 LQLSRDLGAT-YLELPSLNNFFVGRYFGSVLEYFMIQCLKQKAKERPDKRR 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_001245762.1 Cdc42 3..177 CDD:206664 37/170 (22%)
RHO 6..179 CDD:197554 37/172 (22%)
rhobtb3XP_691270.6 P-loop_NTPase <97..189 CDD:304359 22/92 (24%)
BTB 254..>296 CDD:295341
BTB 417..518 CDD:279045
BTB 428..518 CDD:197585
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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