DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc42 and rhobtb4

DIOPT Version :10

Sequence 1:NP_523414.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001352487.1 Gene:rhobtb4 / 553415 ZFINID:ZDB-GENE-060315-11 Length:729 Species:Danio rerio


Alignment Length:200 Identity:79/200 - (39%)
Similarity:115/200 - (57%) Gaps:26/200 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY------VPTVF--DNYAVTV--------MIGGE 49
            ::|||||||||.|||||.|:.:...|...::|      ||||:  |.|.|..        ::...
Zfish    25 VETIKCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDEV 89

  Fly    50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
            ..:|.|:||.|  |:.:.|..:|.::||.::|||:.:|:|..:|:..|.|||.|.|.:||.:|||
Zfish    90 SVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSLANPNSLRHVRTMWFPEIKHFCPRTPIILVG 152

  Fly   115 TQIDLR-DENSTLEKLAKNKQKPI------TMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 172
            .|:||| .:...:.:..:...|||      ..|:|.::|||| .|.|.|.|.:.|.|:|:|||.|
Zfish   153 CQLDLRYADLDAVNRARRPLAKPIKPTDILPPERGHEVAKEL-GVPYYETSIVAQFGVKDVFDNA 216

  Fly   173 ILAAL 177
            |.|||
Zfish   217 IRAAL 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_523414.1 Cdc42 3..177 CDD:206664 77/196 (39%)
rhobtb4NP_001352487.1 RhoBTB 26..220 CDD:133275 76/196 (39%)
BTB_POZ 259..489 CDD:453885
BTB_POZ 494..619 CDD:453885
BACK_RHOBTB2 622..718 CDD:350606
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.