DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc42 and Miro

DIOPT Version :10

Sequence 1:NP_523414.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_651205.2 Gene:Miro / 42845 FlyBaseID:FBgn0039140 Length:673 Species:Drosophila melanogaster


Alignment Length:204 Identity:46/204 - (22%)
Similarity:83/204 - (40%) Gaps:38/204 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR 66
            :.::.::|||..||||.|::|..:.::|.| ||...:...:...:..|.....:.|.:..|..:.
  Fly    10 KNVRILLVGDAGVGKTSLILSLVSEEYPEE-VPPRAEEITIPANVTPEQVPTSIVDFSAVEQSED 73

  Fly    67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ----------------------KTP 109
            .......:..|..:.::|....:.:.:...|:|.:...|.                      :.|
  Fly    74 ALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKP 138

  Fly   110 FLLVGTQIDLRDENSTLEK-LAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 173
            .:|||.:||| .|.||::. ||..:..|           |:::.  |||||.:...:..:|..|.
  Fly   139 IVLVGNKIDL-IEYSTMDSVLAIMEDYP-----------EIESC--VECSAKSLHNISEMFYYAQ 189

  Fly   174 LAALEPPEP 182
            .|.|.|..|
  Fly   190 KAVLHPTSP 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_523414.1 Cdc42 3..177 CDD:206664 43/196 (22%)
MiroNP_651205.2 Miro1 10..195 CDD:206680 44/199 (22%)
EF_assoc_2 245..329 CDD:462444
FRQ1 <333..>360 CDD:444056
EF_assoc_1 367..437 CDD:462443
Miro2 444..620 CDD:206679
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.