DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc42 and Rnd1

DIOPT Version :9

Sequence 1:NP_001245762.1 Gene:Cdc42 / 32981 FlyBaseID:FBgn0010341 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_766200.1 Gene:Rnd1 / 223881 MGIID:2444878 Length:232 Species:Mus musculus


Alignment Length:179 Identity:70/179 - (39%)
Similarity:102/179 - (56%) Gaps:1/179 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP 69
            |.|:|||...|||.:|.....:.:|..||||||:||...:....:...|.|:||:|...||.:||
Mouse    15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP 79

  Fly    70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQ 134
            |.|..:|..|:||.:..|.:.::..:||..||..:|..|..||:|.:.|||.:.|||.:|:..||
Mouse    80 LCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 144

  Fly   135 KPITMEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEAILAALEPPEP 182
            .||:.|||..:||:|.|..|:|.||.| :..:.::|..|.:..|....|
Mouse   145 APISYEQGCAIAKQLGAEIYLEGSAFTSETSIHSIFRTASMVCLNKSSP 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc42NP_001245762.1 Cdc42 3..177 CDD:206664 68/172 (40%)
RHO 6..179 CDD:197554 68/173 (39%)
Rnd1NP_766200.1 P-loop_NTPase 1..232 CDD:304359 70/179 (39%)
RHO 16..190 CDD:197554 68/173 (39%)
Effector region. /evidence=ECO:0000255 42..50 6/7 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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