DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mer and rdx

DIOPT Version :9

Sequence 1:NP_001285458.1 Gene:Mer / 32979 FlyBaseID:FBgn0086384 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_002938008.3 Gene:rdx / 447978 XenbaseID:XB-GENE-990892 Length:590 Species:Xenopus tropicalis


Alignment Length:645 Identity:271/645 - (42%)
Similarity:384/645 - (59%) Gaps:76/645 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSLSVRVSTFDSELEFKLEPRASGQDLFDLVCRTIGLRESWYFGLQYVDTRSNVSWLKMEKRVRD 74
            :.::|||:|.|:||||.::|..:|:.|||.|.:|:||||.|:|||||||::...:|||:.|:|..
 Frog     3 KPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQ 67

  Fly    75 QRVELHASNNVYVFSFYAKFFPENVSEELIQEITQHLFFLQVKQSILSMDIYCRPEASVLLASYA 139
            |.|.   ..|...|.|.||||||:|||||||||||.|||||||::||:.:|||.||.:|||||||
 Frog    68 QDVR---KENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYA 129

  Fly   140 VHVQYGPYDYETYKDGMLAGGELLPKGVTDQYQMTPEMWEERIKTWYMDHEPMTRDEVEMEYLKI 204
            |..:||.|..|.:|.|.||...|||:.|.:|:::|.|.|||||:||:.:|..|.|::..||||||
 Frog   130 VQAKYGDYSKEAHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQTWHEEHRSMLREDSMMEYLKI 194

  Fly   205 AQDLDMYGVNYFPITNKNKTKLWLGVTSVGLNIYDERDKLTPKTTFQWNEIRHVSFDDKKFTIRL 269
            ||||:|||||||.|.||..|:|||||.::|||||:..||||||..|.|:|||::||:||||.|:.
 Frog   195 AQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP 259

  Fly   270 VDAKVSNFIFYSQDLHINKMILDLCKGNHDLYMRRRKPDTMEIQQMKAQAKEEKQRRQIERKKFI 334
            :|.|..:|:||:..|.|||.||.||.|||:||||||||||:|:|||||||:|||.::|:||.:..
 Frog   260 IDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLE 324

  Fly   335 REKKLREKAEHERYELEKSMEHLQNEMRMANDALRRSEETKELYFEKSRVNEEQMQLTECKANHF 399
            .|||.||.||.|:..:|:..:.|...:|...:...:::  |||        |||.:    ||...
 Frog   325 NEKKKREIAEKEKERIEREKDELIERLRQIEEQTLKAQ--KEL--------EEQTR----KALEL 375

  Fly   400 KTEMDRLRERQMKIEREKHDLEKKIRDADFYVHQLTVENDK----REAETEKLRKELICAKMAER 460
            ..|..|.:|...::|:|:.                ..|..|    ::|..:...:|.:.|::||.
 Frog   376 DQERKRAKEEAERLEKERQ----------------AAEEAKSALAKQAADQMKNQEQLAAELAEF 424

  Fly   461 EATARLLEFLNSGRKSSTDSLLTASSVSHAANTASSMAAISTPSLITSSSTNDLETAGGAE---- 521
            .|...|||   ..:|...:.   ||...|.|.||..         ....:..:|:|...|.    
 Frog   425 TAKIALLE---EAKKKKEEE---ASEWQHKAYTAQE---------DLEKTKEELKTVMSAPPPPP 474

  Fly   522 ----------LTTHSSH-YLVQGDNSSGISDDFEPKEFILTDNEMEQITNEMERNHLDYLRNSKQ 575
                      ..|.:.| :..|.:||:..|.:...:..:...:|.|::| |.::|        ::
 Frog   475 PPQLLPPPPVAPTENEHDHDEQDENSAEASAELSSEGVMNHRSEEERLT-ETQKN--------ER 530

  Fly   576 VQSQLQTLRSEIAPHKIEENQSNLDILSEAQIKAGENKYSTLKKLKSGSTKARVAFFEEL 635
            |:.|||.|.||:|..:.|..::..|:|....:|||.:||.||::::.|:||.|:..||.:
 Frog   531 VKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRDKYKTLRQIRQGNTKQRIDEFEAM 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MerNP_001285458.1 B41 14..216 CDD:214604 117/201 (58%)
FERM_C_ERM 210..306 CDD:270015 60/95 (63%)
ERM 341..635 CDD:395622 76/312 (24%)
rdxXP_002938008.3 B41 7..206 CDD:214604 117/201 (58%)
FERM_C_ERM 200..296 CDD:270015 60/95 (63%)
ERM 345..590 CDD:366293 71/298 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D281811at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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