DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mer and nfm-1

DIOPT Version :9

Sequence 1:NP_001285458.1 Gene:Mer / 32979 FlyBaseID:FBgn0086384 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_498336.1 Gene:nfm-1 / 175870 WormBaseID:WBGene00003593 Length:709 Species:Caenorhabditis elegans


Alignment Length:669 Identity:223/669 - (33%)
Similarity:366/669 - (54%) Gaps:79/669 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SKKNRSLSVRVSTFDSELE-FKLEPRASGQDLFDLVCRTIGLRESWYFGLQYVDTRSNVSWLKME 69
            |:..:.:..:|||.|::|| ..:|...:|:.||:.|||.|||||:||||||:.:.::...||:.:
 Worm     8 SRNTKPIYAKVSTMDADLEKIVIEKTWTGRHLFEAVCRIIGLRETWYFGLQFTNKKNIPCWLQND 72

  Fly    70 KRVRDQRVELHASNNVYVFSFYAKFFPENVSEELIQEITQHLFFLQVKQSILSMDIYCRPEASVL 134
            |.:..|.::...|:..:.|.|..||:||:|..|:|.:.|:||||||::::||||::||.||||||
 Worm    73 KTICGQDIQKDTSDGTFNFLFLVKFYPEDVEPEIILDATRHLFFLQIREAILSMNLYCSPEASVL 137

  Fly   135 LASYAVHVQY-------GPYDYETYKDGMLAGGELLPKGVTDQYQMTPEMWEERIKTWYMDHEPM 192
            |||:||...:       ||.|.:.:          |||.|.|||.|:.:||.:|||.|:..:...
 Worm   138 LASFAVQAMHGDCTEEVGPIDLDKH----------LPKSVIDQYDMSADMWRDRIKRWWSRNAGQ 192

  Fly   193 TRDEVEMEYLKIAQDLDMYGVNYFPITNKNKTKLWLGVTSVGLNIYDERDKLTPKTTFQWNEIRH 257
            :|:|.|:|||::||||:|||:.|:||.|..:|.|.||:::.||.||...:::||:..|.|:||::
 Worm   193 SREEAELEYLRVAQDLEMYGILYYPICNNKETDLHLGISAQGLGIYKGVNRITPRPFFSWSEIKN 257

  Fly   258 VSFDDKKFTIRLVDAKVSNFIFYSQDLHINKMILDLCKGNHDLYMRRRKPDTMEIQQMKAQAKEE 322
            :.|.::||.::.||.  |...|.|::..|:..|||||.|.|:||:|||:|||:|:|||::||||:
 Worm   258 IQFKNRKFHMKTVDK--STISFRSRETSIDSSILDLCIGTHNLYLRRRQPDTLEVQQMRSQAKED 320

  Fly   323 KQRRQIERKKFIREKKLREKAEHERYELEKSMEHLQNEMRMANDALRRSEETKELYFEKSRVNEE 387
            ||||..|:.|...|:|.|::.|.|..|:::.:|.:..|:..|.:.:|::||..:...||:|.:|.
 Worm   321 KQRRAAEQAKVALERKERQQMEKEYKEMKQKVEVMTLELMKAQENIRKAEEANDQLAEKARHSEH 385

  Fly   388 QMQLTECKANHFKTEMDRLRERQMKIEREKHDLEKKIRDADFYVHQLTVENDKREAETEKLRKEL 452
            :..:...:.:..:.|.:||....||.|.....:|:|.|:|:....|:::.......:..:     
 Worm   386 ETLMLYKQKSEVEAECNRLSMNNMKSEEALLRMERKAREAEILAKQMSMSLADVSLDANR----- 445

  Fly   453 ICAKMAEREATARLLEFLN-----SGRKS------STDSLLTASSVSHAANTASSMA-AISTPSL 505
               ||.:..:.:.|:...|     ||.:|      ||.|.....|:....:....|: :::.||.
 Worm   446 ---KMTQYSSQSALIIDPNWHQQVSGHQSGHPGMPSTGSFHQLQSLDTHTHPQQMMSRSLNMPSS 507

  Fly   506 ITSS---STNDLETAGGAELT----THSSHYLVQGDN------SSG---------ISDDFEPKEF 548
            ..||   |...|......:::    .|.....||..|      .||         ||..||.:..
 Worm   508 AFSSPIPSNQPLSHQQPQQMSQNTQAHQQQTQVQNQNQPPYYGGSGMIIPPPDPSISQIFEQQTT 572

  Fly   549 ILTDNEMEQITNEMERNHLDYLRNSKQVQSQLQTLRSEIAPHKIEENQSN-----LDILSEAQIK 608
            ::          |:|::..:|...::..:..|:.||.:|...|.:.|..|     .|.:....:.
 Worm   573 LM----------ELEKSRSEYETRARIFKEHLEELRGDIDGLKRDGNVQNGQHREHDAVHAQNVA 627

  Fly   609 AGENKYST--LKKLKSGST 625
            .|.:|::|  :||.||.|:
 Worm   628 HGFDKFTTMRMKKSKSASS 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MerNP_001285458.1 B41 14..216 CDD:214604 92/209 (44%)
FERM_C_ERM 210..306 CDD:270015 41/95 (43%)
ERM 341..635 CDD:395622 71/326 (22%)
nfm-1NP_498336.1 B41 16..216 CDD:214604 92/209 (44%)
FERM_C_ERM 210..304 CDD:270015 41/95 (43%)
G_path_suppress 320..>526 CDD:374274 51/213 (24%)
ERM 339..>432 CDD:366293 23/92 (25%)
Med15 <464..>608 CDD:312941 32/153 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166392
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D281811at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23281
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.950

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