DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and RAD23A

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_173070.1 Gene:RAD23A / 838188 AraportID:AT1G16190 Length:368 Species:Arabidopsis thaliana


Alignment Length:434 Identity:86/434 - (19%)
Similarity:151/434 - (34%) Gaps:133/434 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKT-----------PKD-----KKTVEVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIM 57
            :.:.|||           |.|     ||.:   |||..||         .....|.:||..||::
plant     1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNI---EDSQSKD---------NYPCGQQLLIHNGKVL 53

  Fly    58 KDTDTLQMHNI-KDNLTVHLVIKAPTRNNEQP-ARQPADVRQTPFGLNQFGGLAGME--ALGAGS 118
            ||..||..:.: ::...|.::.|:.|.::..| :.||.....:..........:..:  |:.|.:
plant    54 KDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASN 118

  Fly   119 NTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQLITSNPQMHDLMQRNPEISHMLN 183
            :|.:..|...|::  ..|....:|:....::||                                
plant   119 STPVQEQPTAQSD--TYGQAASTLVSGSSIEQM-------------------------------- 149

  Fly   184 NPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNP 248
                ::|.||:.......:.:.|:...|.:|.|      .|:..:|..|.|.:...||.      
plant   150 ----VQQIMEMGGGSWDKETVTRALRAAYNNPE------RAVDYLYSGIPETVTIPATN------ 198

  Fly   249 FAGLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMR 313
                :.|.|||          .....|.|.||.||            :|. ||.|...::..|..
plant   199 ----LSGVGSG----------RELTAPPPSGGPNS------------SPL-DLFPQEAVSDAAGG 236

  Fly   314 SL--LQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAARLLSSSPLMSNNPALQEQVRQMMPQF 376
            .|  |:.:..|....|       .|||:.|   :|.:...:|..  |...||.|...:::...:|
plant   237 DLGTLEFLRGNDQFQQ-------LRSMVNS---NPQILQPMLQE--LGKQNPQLLRLIQENQAEF 289

  Fly   377 MAQMQNPEV-----MNMLTNPD-----AMNAILQIQQGMEQLRS 410
            :..:..|..     :::...||     ::|...:.|:.:|:|.:
plant   290 LQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEA 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 22/86 (26%)
PABP-1234 <233..409 CDD:130689 39/187 (21%)
UBA_PLICs 501..537 CDD:270582
RAD23ANP_173070.1 rad23 1..365 CDD:273167 86/434 (20%)
Blue background indicates that the domain is not in the aligned region.

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