DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and RAD23D

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_198663.1 Gene:RAD23D / 833835 AraportID:AT5G38470 Length:378 Species:Arabidopsis thaliana


Alignment Length:444 Identity:93/444 - (20%)
Similarity:151/444 - (34%) Gaps:148/444 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKTPKDKK-TVEVDEDSGIKDFKILVAQKFEAE--PEQLVLIFAGKIMKDTDTLQMHNIKD 70
            :.:.|||..... .:||.....:.|.|..:.....||  ..:.:||..||::||..||:.:|:.:
plant     1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVE 65

  Fly    71 NLTVHLVIK---------------APTRNNEQPARQP---ADVRQTPFGLNQFGGLAGMEALGAG 117
            |..:.:::.               ||:....|....|   |.....|...:   |.|...|....
plant    66 NSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTS---GTATAAAPATA 127

  Fly   118 SNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMN------NPDTMRQLITSNPQMHDLMQRNP 176
            ::...|:..:..:.|: .|..|.|     .|||:::      :.||:.:.:.:            
plant   128 ASVQTDVYGQAASNLV-AGTTLES-----TVQQILDMGGGSWDRDTVVRALRA------------ 174

  Fly   177 EISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAAT 241
                ..|||                       :||:..|.|   |..|...|....|.|    ||
plant   175 ----AFNNP-----------------------ERAVEYLYS---GIPAQAEIPPVAQAP----AT 205

  Fly   242 ESFGRNPFAGLVDGGGSGAGNNPQQ--------GTENRNPL---PNPWGGANSGTNGTVGGSGAG 295
            .....||.|            .|||        |..|.|||   |.....|::       |:|||
plant   206 GEQAANPLA------------QPQQAAAPAAATGGPNANPLNLFPQGMPAADA-------GAGAG 251

  Fly   296 NPTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAARLLSSSPL-- 358
            |      .:.:.|:...::|...:..||.::|.:|        .|...|:|.: .||:.....  
plant   252 N------LDFLRNSQQFQALRAMVQANPQILQPML--------QELGKQNPQL-VRLIQEHQADF 301

  Fly   359 --MSNNPA-----LQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQIQQGM 405
              :.|.|.     :.||:...|||.:.           ..|:...||.:: :||
plant   302 LRLINEPVEGEENVMEQLEAAMPQAVT-----------VTPEEREAIERL-EGM 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 19/72 (26%)
PABP-1234 <233..409 CDD:130689 45/193 (23%)
UBA_PLICs 501..537 CDD:270582
RAD23DNP_198663.1 rad23 1..374 CDD:273167 93/444 (21%)
Blue background indicates that the domain is not in the aligned region.

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