DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and AT4G05240

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_192433.1 Gene:AT4G05240 / 825872 AraportID:AT4G05240 Length:197 Species:Arabidopsis thaliana


Alignment Length:142 Identity:28/142 - (19%)
Similarity:55/142 - (38%) Gaps:36/142 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLV----LIFAGKIMKDTDTLQMHNIKDNL 72
            |.|.|..|..:|:    |..|..:.:.||.|.....||    |.|.|.:::|...::...|.::.
plant    62 VWKLPNYKFEIEL----GYWDTVLEIKQKIEKYQRILVYRQTLFFQGNVLQDHLDIEQCVILNHS 122

  Fly    73 TVHLVI---KAPTRNNEQ-----------PARQPADVRQTPFGLNQFGGLAGMEALGAGSNTFMD 123
            .:.:.:   :.|..:|:|           .|::..:|:.:|..:.              ||..:.
plant   123 LLKVFVDPYRNPNHDNDQMLQTEESPPLNSAKEIVNVQDSPIMVR--------------SNMKVA 173

  Fly   124 LQARMQNELLNN 135
            ...:::|...||
plant   174 TSIKVENNNNNN 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 17/73 (23%)
PABP-1234 <233..409 CDD:130689
UBA_PLICs 501..537 CDD:270582
AT4G05240NP_192433.1 ubiquitin 65..130 CDD:459726 15/68 (22%)
Blue background indicates that the domain is not in the aligned region.

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