DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and rad23ab

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001032776.2 Gene:rad23ab / 562839 ZFINID:ZDB-GENE-051113-160 Length:404 Species:Danio rerio


Alignment Length:474 Identity:88/474 - (18%)
Similarity:162/474 - (34%) Gaps:161/474 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKTPKDKK-TVEVDEDSGIKDFKILVAQKFEAEPEQ-------LVLIFAGKIMKDTDTLQM 65
            :.:.:||.:.:. .|::||:..:|..|    :|.|.|..:       ..||:||||:.|...|:.
Zfish     2 LTITLKTLQQQTFKVQIDEELTVKALK----EKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKE 62

  Fly    66 HNIKD-NLTVHLVIK----------APTRNNEQPARQPADVRQTPFGLNQFGGLAGMEALGAGSN 119
            :.|.: |..|.:|.|          .|...:|.|..||......|                    
Zfish    63 YKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPP-------------------- 107

  Fly   120 TFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNN 184
                           |..::.....:|...:...:.:.:...:|:.|...:              
Zfish   108 ---------------NASIVPETTPDPAPVEPAASVEPIDPPVTAPPAASE-------------- 143

  Fly   185 PDLLRQTMELARNPSML--QELMRSHDRAMSNLE-SVPGGYSALQ---------RIYRDIQEPMM 237
             |.:..|..::..|:.:  :|:....::|::..| |:....|.|:         :.|.::...:|
Zfish   144 -DTVETTEPVSATPAPVVEEEIQGQEEQAIAQSEASLTDELSLLEAAASILVTGQAYENLVTEIM 207

  Fly   238 N---------AATESFGRNPFAG---LVDGGGSGAGNNPQQ---GTENRNPLP------NP---W 278
            :         ||..:...||...   |:.|..:.:...||:   .|.:.||.|      .|   .
Zfish   208 SMGYEREQVIAALRASFNNPDRAVEYLLTGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAA 272

  Fly   279 GGANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMS 343
            .||.||     |...:.||                            ::.|.:.|..:.|.:.:.
Zfish   273 AGAESG-----GAQASANP----------------------------LEFLRHQPQFQQMRQIIQ 304

  Fly   344 QDPDMAARLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDA-----MNAILQIQQ 403
            |:|.:...||..  |..:||.|.:|:.|...:|:..:..||.    ..|.|     :....|.::
Zfish   305 QNPSLLPALLQQ--LGRDNPQLLQQITQHQERFVQMLNEPEA----EAPAAPQTNYIQVTPQEKE 363

  Fly   404 GMEQLRSAAPGLVGTLGIP 422
            .:|:|::        ||.|
Zfish   364 AIERLKA--------LGFP 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 22/78 (28%)
PABP-1234 <233..409 CDD:130689 41/204 (20%)
UBA_PLICs 501..537 CDD:270582
rad23abNP_001032776.2 rad23 2..402 CDD:273167 88/474 (19%)
Blue background indicates that the domain is not in the aligned region.

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