DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and RpS27A

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster


Alignment Length:72 Identity:27/72 - (37%)
Similarity:42/72 - (58%) Gaps:1/72 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKTPKDKK-TVEVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIMKDTDTLQMHNIKDNL 72
            :.:.|||...|. |:||:....|::.|..:..|....|:|..||||||.::|..||..:||:...
  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    73 TVHLVIK 79
            |:|||::
  Fly    66 TLHLVLR 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 27/70 (39%)
PABP-1234 <233..409 CDD:130689
UBA_PLICs 501..537 CDD:270582
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 27/72 (38%)
Ribosomal_S27 103..147 CDD:460261
Blue background indicates that the domain is not in the aligned region.

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