DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubqn and Rad23b

DIOPT Version :9

Sequence 1:NP_001285457.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001020446.1 Gene:Rad23b / 298012 RGDID:1562958 Length:415 Species:Rattus norvegicus


Alignment Length:594 Identity:111/594 - (18%)
Similarity:174/594 - (29%) Gaps:243/594 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKTPKDKK-TVEVDEDSGIKDFKILVAQKFEAEPEQ-------LVLIFAGKIMKDTDTLQM 65
            :.|.:||.:.:. .:::|.:..:|..|    :|.|:|..:       ..||:||||:.|...|:.
  Rat     1 MQVTLKTLQQQTFKIDIDPEETVKALK----EKIESEKGKDAFPVAGQKLIYAGKILSDDTALKE 61

  Fly    66 HNIKD-NLTVHLVIK---------APTRNNEQP-------------ARQPADV-----RQTPFGL 102
            :.|.: |..|.:|.|         |.|:.:..|             |:.||..     ..||...
  Rat    62 YKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPTSTPAST 126

  Fly   103 NQFGGLAGMEALGAGSNTFMDLQAR--MQNELLNN--------GDMLRS-LMDNP---------- 146
            ......|..|....|: |..:..|.  .|..:|.:        ||..|| |.::.          
  Rat   127 TPASTTASSEPAPTGA-TQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSY 190

  Fly   147 --MVQQMMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHD 209
              ||.::|:......|:|.:             :....|||                       |
  Rat   191 ENMVTEIMSMGYEREQVIAA-------------LRASFNNP-----------------------D 219

  Fly   210 RAMSN-LESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGAGNNPQQGTENRNP 273
            ||:.. |..:||     .|..:.:.:|                            |.|......|
  Rat   220 RAVEYLLMGIPG-----DRESQAVVDP----------------------------PPQAVSTGTP 251

  Fly   274 LPNPWGGANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSM 338
            .......|.:.|..|...:..|:|                            ::.|.|.|..:.|
  Rat   252 QSPAVAAAAATTTATTTTTSGGHP----------------------------LEFLRNQPQFQQM 288

  Fly   339 MESMSQDPDMAARLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQIQQ 403
            .:.:.|:|.:...||..  :...||.|.:|:.|....|:..:..|                 :|:
  Rat   289 RQIIQQNPSLLPALLQQ--IGRENPQLLQQISQHQEHFIQMLNEP-----------------VQE 334

  Fly   404 GMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNNVSPSSGLNAGTGTPNLAP 468
                                           |.|.|.||..|            ..|.|      
  Rat   335 -------------------------------AGGQGGGGGGG------------GGGGG------ 350

  Fly   469 GGGPNAQLFNDFMMRMLNGMSNNADNTQPPEVRYQSQLEQLNAMGFVNRDANLQALIATFGDINA 533
            |||..|:..:..|         |.....|.|   :..:|:|.|:|| .....:||..|...:.|.
  Rat   351 GGGGIAEAGSGHM---------NYIQVTPQE---KEAIERLKALGF-PEGLVIQAYFACEKNENL 402

  Fly   534 AVERLLSLN 542
            |...||..|
  Rat   403 AANFLLQQN 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_001285457.1 UBQ 9..79 CDD:214563 21/78 (27%)
hPLIC_N 9..79 CDD:176403 21/78 (27%)
STI1 322..368 CDD:128966 11/45 (24%)
UBA_PLICs 501..537 CDD:270582 10/35 (29%)
Rad23bNP_001020446.1 rad23 1..413 CDD:273167 111/594 (19%)
RAD23_N 1..78 CDD:176400 22/80 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..175 18/95 (19%)
MSA-2c <125..186 CDD:289042 12/61 (20%)
UBA1_Rad23 189..228 CDD:270560 12/74 (16%)
XPC-binding 276..331 CDD:286376 14/56 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..355 11/69 (16%)
UBA2_HR23B 371..415 CDD:270611 14/45 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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