DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and Ubqlnl

DIOPT Version :9

Sequence 1:NP_001285457.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001013921.1 Gene:Ubqlnl / 293287 RGDID:1307202 Length:612 Species:Rattus norvegicus


Alignment Length:619 Identity:171/619 - (27%)
Similarity:275/619 - (44%) Gaps:132/619 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 INVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIMKDTDTLQMHNIKDNLT 73
            |.|:||||.::....|.||:.::.||..::..|:.:.|||||:..|:::||.|||....|.|..|
  Rat    31 IRVIVKTPGNQNVFTVAEDTSVRQFKEQLSSHFKCQMEQLVLVSMGRLLKDHDTLSQRGITDGHT 95

  Fly    74 VHLVIKA------------------PTRNNEQPARQPADVRQTPFGLNQFGGLAGMEALGAGSNT 120
            :|:|||:                  |...:..|....:.|.|:          |||......|:.
  Rat    96 IHVVIKSKHGSRSLTHSFRNLLTNNPCHQDRNPKGNSSTVCQS----------AGMSETKVESSI 150

  Fly   121 FMDLQAR---MQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQLITSNPQMHDLMQRNPEISHML 182
            .|:..|.   .|:..:.:.:.:..:::...||::::|...|.||...:|.|.||:|:|||:||:|
  Rat   151 LMEPDASKVCTQDPEVGSPEQIEQMLETLCVQRLLSNMFFMHQLPPEHPDMQDLIQQNPEVSHLL 215

  Fly   183 NNPDLLRQTMELARNPSMLQELMRSHDRAMS-----------NLESVPGGYSALQRIYRDIQEPM 236
            :|.::|.||:||||:.:::||:|:....|.:           .||::|.|...|.:.|.:..:.|
  Rat   216 DNSEILCQTLELARHLAIIQEIMQIQQPAQNPEHTLNPQPYLGLETIPNGNIVLGQGYDNFNDHM 280

  Fly   237 MNAA---------------------------------TESFGRNPFAGLVDGGGSGAGNNPQQ-- 266
            :|..                                 .|.:|:...:.::.....|....|.:  
  Rat   281 LNGVHVHDLLEDDSFTALLAEQVLEQVQTPSLCQPPPQEQWGQLSSSQVIFANSCGFLTTPTEAN 345

  Fly   267 -GTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMR--------------SLL 316
             .|.|.....||   |.:.|.|.........|| ::|  ::...|.::              |..
  Rat   346 LNTTNNASRENP---AIAATQGQSNVCAVQQPT-EIP--SLCTIPVIQEPREGDKDTTIPQGSSA 404

  Fly   317 QQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAARLLSSSPLMSNNPALQEQVRQMMPQFMAQMQ 381
            |.:.::....:...::..||||::.:...|.|||.:|    |:.|.|.|.||.||.....:...|
  Rat   405 QWLEEDLQQSEEQSSSQITRSMIQLLRTHPHMAAEML----LLLNPPQLNEQWRQQTATPLQSSQ 465

  Fly   382 NPEVMNMLTNPDAMNAILQIQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGA 446
            ..:::..|.||....|:|||:.|::.|.:.||.|:..  |.|...|.| ...|:|.|..  ::..
  Rat   466 LSDLLLALANPKTSQALLQIEHGLQLLATEAPALLPY--IEPYLWGLG-WLIPSSCDYL--DTVP 525

  Fly   447 STNNVS-------PSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEVRYQS 504
            .|.||.       |.|...:||......|                |:|.|::  :.|.||||:..
  Rat   526 WTWNVQDTVEPQCPESCHKSGTVLQREQP----------------LSGDSSH--SLQAPEVRFSK 572

  Fly   505 QLEQLNAMGFVNRDANLQALIATFGDINAAVERL 538
            ::|.|.||||||.:|||||||||.||.|||:.:|
  Rat   573 EMECLQAMGFVNYNANLQALIATDGDTNAAIHKL 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_001285457.1 UBQ 9..79 CDD:214563 28/69 (41%)
hPLIC_N 9..79 CDD:176403 28/69 (41%)
STI1 322..368 CDD:128966 13/45 (29%)
UBA_PLICs 501..537 CDD:270582 23/35 (66%)
UbqlnlNP_001013921.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
UBQ 31..101 CDD:214563 28/69 (41%)
UBQ 31..101 CDD:294102 28/69 (41%)
UBA_PLICs 569..606 CDD:270582 23/36 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1553668at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10677
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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