DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubqn and F52C6.3

DIOPT Version :10

Sequence 1:NP_608344.1 Gene:Ubqn / 32977 FlyBaseID:FBgn0031057 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_494127.2 Gene:F52C6.3 / 186085 WormBaseID:WBGene00018660 Length:197 Species:Caenorhabditis elegans


Alignment Length:187 Identity:38/187 - (20%)
Similarity:64/187 - (34%) Gaps:63/187 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIMKDT--DTLQMHNIKDNL 72
            |:.|:.||..|| ||.:..|:                    :|.....|.|  ..::|.:...::
 Worm    12 NITVEAPKSVKT-EVRDKQGV--------------------VFTVSYDKGTGNQIIEMEDTVQDV 55

  Fly    73 TVHLVIKAPTRNNEQPARQPADVR-------------QTPFGLNQFGGLAGMEALG-------AG 117
            .:....:||.|.:|:....|..|.             :|...|:..|....:|..|       :.
 Worm    56 KIQEAQQAPLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRIYVENAGRTCTLDTSA 120

  Fly   118 SNTFMDLQARM----------QNELLNNGDM-----LRSLMDNPMVQQMMNNPDTMR 159
            |:|...::|::          |..||.|.|:     ..:|.||     ...|..|:|
 Worm   121 SDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLFDN-----SFENGSTLR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UbqnNP_608344.1 Ubl_PLICs 7..79 CDD:340506 13/70 (19%)
PABP-1234 <233..409 CDD:130689
UBA_PLICs 501..537 CDD:270582
F52C6.3NP_494127.2 Ubl1_cv_Nsp3_N-like 103..173 CDD:475130 16/75 (21%)
Blue background indicates that the domain is not in the aligned region.

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