DRSC/TRiP Functional Genomics Resources

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Protein Alignment dome and Ptprq

DIOPT Version :9

Sequence 1:NP_523412.1 Gene:dome / 32976 FlyBaseID:FBgn0043903 Length:1282 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:1550 Identity:296/1550 - (19%)
Similarity:487/1550 - (31%) Gaps:547/1550 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AILDPGWVIPSKVEQLIGGDFNLSCTLNEDYFNGKSAEDCP--VEKL--YFTGGGRVYRDSKHIR 83
            ::|:.|.::.           |...|..::|.|.....:..  |:.:  ::.|.|.:..|...:.
Mouse   436 SVLESGVILE-----------NTLLTGQDEYINNPMTPEIMNLVDPMIGFYEGSGEMSSDLHSLA 489

  Fly    84 --ILNNTTILFSDTNAVEQE---------NDYHCMCD------EYVINK---------------- 115
              |.|:....|.....||.:         |.|  |.|      .|||.:                
Mouse   490 SFIYNSHPHDFPARTRVEDQRSPVVVATRNQY--MTDIAAEHLSYVIRRLVPFTEHTISVSAFTV 552

  Fly   116 ------SKVYVGTR---PLLVRDFNCLDYDFQFMVCNFTQP--PNTVITKYNISYNTNNDWRYSN 169
                  :.:.|.||   |..::..|..:.....::..:..|  ||..||.|.|         |:.
Mouse   553 MGEGPPTVLTVRTREQVPSSIQIINYKNISSSSILLYWDPPEYPNGKITHYTI---------YAM 608

  Fly   170 TLDCN-------FDSAPVVTCNLTDDNYKRFSETFYFRLSISNALGHETQPITINHFERL---VP 224
            .||.|       .|::.::|      ..|:::. :..|::.|..:|..:.....:.|.|.   .|
Mouse   609 ELDTNRAFQMTTVDNSFLIT------GLKKYTR-YKMRVAASTHVGESSLSEENDLFVRTPEDEP 666

  Fly   225 ARPGQNLTLLNRTESSVCLSWEMPRRSNYNRGLVWQVRVTPQNFEPITRPSWRNHTLTIKDT--- 286
            ....|::.:.:.:.|.:.|:|..|.:.|   |::....|..||.:          .|.:|:|   
Mouse   667 ESSPQDVKVTDVSPSELSLTWSPPEKPN---GIIIAYEVFYQNAD----------ALFVKNTSTT 718

  Fly   287 -LCLTEL-PFAGYNYTLRVRVRANQNNTLWSEPMIYAFATAPAPPRRPPRVTYGSFYVYSSEKAM 349
             :.|::| |:..||.:::...|....|.  |..::....:...|...|..:||.:.   |||:..
Mouse   719 NITLSDLKPYTLYNISIQSYTRLGHGNQ--SSSLLSVRTSETVPDSAPENITYKNI---SSEEIE 778

  Fly   350 RFYWEPLEEHELNGPDFRYSISEYRINGTAVDPGLIKVESNSAMIDHWSMSAVHHFLIRSSNS-- 412
            .|:..|   ...||...:|:|...|.|.....    .:|:.|..:....:....|::|..|.|  
Mouse   779 IFFLPP---RSPNGIIQKYTIYLKRSNSHEAR----TIETTSLTLTIGGLKKYTHYVIEVSASTL 836

  Fly   413 QGLSVNATPMTIGPISNRDFKVREPRNIRSVYHPTNKSYTLSWDP-------------------- 457
            :|..|.:.|::|  ::..|.....|:|. ||...:..:..|||.|                    
Mouse   837 KGEGVRSMPISI--LTEEDAPDSPPQNF-SVKQLSGVTVMLSWQPPLEPNGIILYYTVYVWDKVS 898

  Fly   458 --------------------------------------------------PSDQRELQNYT---- 468
                                                              |||..:..:|.    
Mouse   899 LKTINATEVSLELSDLDYHADYSAYVTASTRFGDGKTRSSVINFRTPEGEPSDPPKDVHYVNLSS 963

  Fly   469 ----VFWCVP-KPGLQSECEGSIRFAEV------ASGLHHFTTSPDQLLTL-----HMAVSAN-Y 516
                :||..| ||      .|.|::..|      ::.:.:||     ||.:     ::.|||. |
Mouse   964 SSIILFWTPPVKP------NGIIQYYSVYYQNTSSTFVQNFT-----LLEVTQEPGNVTVSARIY 1017

  Fly   517 Q----SHNTGLHWAICSS-----DKKDDLAKMEPSIDV------------ATSTSLTVSWSERVC 560
            :    |:.|  .|...|:     :|..|:..:....|:            .:||::.|||:....
Mouse  1018 KLAVFSYYT--FWLTASTLVGNGNKSSDVIHVYTDQDIPEGGVGNLTYESLSSTAINVSWTPPSQ 1080

  Fly   561 AVILAGY----NLTYCQRSAGRPDNCTTVTIDRYTNKHVIQNLVPYTDYSVKMLMYSDSRVSK-Y 620
            ...|..|    ||........||...|      |.|.....||..||||..|:...::...|: |
Mouse  1081 PNGLVFYYVSLNLQQSPPRHRRPPLTT------YENSIYFDNLEKYTDYIFKITPSTEKGFSETY 1139

  Fly   621 SDELVNRTGEAAPSQPRELQLIR-VTSDSVELAWKPPLLANGVVRAYEGTFRSLHDNVTDTFRVS 684
            :.:|..:|.|..|..|..:...: ::|.|:.|:|.|||..||.:.:|..|.:..|.|.|    ..
Mouse  1140 TAQLHIKTEEDVPDTPPIINTFKNLSSTSILLSWDPPLKPNGAILSYHLTLQGTHANRT----FV 1200

  Fly   685 ASADELVNNEKPITYRLGNLTAFTKYEISVRARTVYPSEPSNVILFSTAIGVP-SPPQ-LYVINN 747
            .|.:.:|         |..|:.||.|.....|||:....||:::.|.|....| :||| |.:||.
Mouse  1201 TSGNHIV---------LEELSPFTLYSFLAAARTMKGLGPSSILFFYTDESAPLAPPQNLTLINY 1256

  Fly   748 PDQSSRLDWEPPRTPAGRIDFYEISLRDNNASCLTSTILPGRNLS-------------------Y 793
            ......|.|.|...|.|.:..|...:.::.    |.|:. .:|:|                   .
Mouse  1257 TSDFVWLTWSPSPLPGGIVKVYSFKIHEHE----TDTVF-YKNISGFQTDAKLAGLEPVSTYSIS 1316

  Fly   794 VMATPRCTSHNPFQLAVRAINVEQHPQLNGADAAEGAVLLMSTNGKGCEARTDALGEEERLQFEA 858
            |.|..:..:.|.|...|:....|..|     ||.:..         .|.||              
Mouse  1317 VSAFTKVGNGNQFSNVVKFTTQESVP-----DAVQNI---------ACVAR-------------- 1353

  Fly   859 YAANMTAYRLYRSDWGIYGFICTPDTHSVKAMYQTIEVTVAILVLGVIFYLVYKKYRKMSDIGLV 923
                         ||           .||..|:........|    :|.|::             
Mouse  1354 -------------DW-----------QSVSVMWDPPRKANGI----IIHYMI------------- 1377

  Fly   924 LPQGIMETMKKPIDMGGLGLGLGPDSSVSGGIVCTRVDDSPPYTPQDLPHDFSSCGSESSKLLLR 988
                                      :|.|        :|...:|:|..:.|:...:.:|.:...
Mouse  1378 --------------------------TVEG--------NSTKVSPRDPMYTFTKLLANTSYIFEV 1408

  Fly   989 TASSSGGGGCVDRDGYDDNHETGPISAVG----------------PPTSYLAMRHGLLVQNDRER 1037
            .||:|.|.|...:.......||.|.....                .|.:.|.......:......
Mouse  1409 RASTSAGEGNESQCNVSTLPETVPSVPTNTAFSNVQSTSVTLRWIKPDTILGYFQNYKITTQLRA 1473

  Fly  1038 ERERDREQEREREQQQQQRESEMDREQSCTNGYIK------------------------------ 1072
            ::.|:.|.|...|.|:.|...|.::.:....|..|                              
Mouse  1474 QKCREWEPEECVEHQEVQYLYEANQTEDTVRGLKKFQWYRFQVAASTNAGYGNASSWISTQTLPG 1538

  Fly  1073 -----PTQMK-----------SWGG----NGPS---------DNDH------------------- 1089
                 |..::           ||..    .||:         |||:                   
Mouse  1539 PPDGPPENVRVVATSPFGINISWNEPAIITGPTFYLIDVKSVDNDNFNISFVKSNEENKTTEIND 1603

  Fly  1090 -----TFSVPSTAMTAPMSQPLSQIPLSGYVPVPIPQSRFNPAPVQPFGS---PAVPSAATAAAA 1146
                 .:||..||....:|...:....|..|.:...:|    .|..|..:   ..:|...|....
Mouse  1604 LEVFTRYSVVITAFVGNVSGAYTDGKSSAEVIITTLES----VPKDPPNNMTFQKIPDEVTKFQL 1664

  Fly  1147 STFFPPAH----------LLNMDNYVQASDLHKLK-------PLVAAPLSQTGGPAFAGSSPATS 1194
            | |.||:.          |:..::...|..:|.|.       .::|......||..:..|     
Mouse  1665 S-FLPPSQPNGNIQVYQALVYREDDPTAVQIHNLSIIQKTDTSVIAMLEGLKGGHTYNIS----- 1723

  Fly  1195 PPLQLPPVHAASPAAATPKMADIGYTTMEQLQLTGLIKPPL-AATVGSPTHAAGG 1248
                   |:|.:.|.|.||:         |:::|..||.|. ..|...|.|.|.|
Mouse  1724 -------VYAINSAGAGPKV---------QMRITMDIKAPARPKTKPIPIHDATG 1762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
domeNP_523412.1 fn3 541..621 CDD:278470 23/96 (24%)
FN3 633..732 CDD:238020 29/99 (29%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830 1/4 (25%)
FN3 570..654 CDD:238020 19/99 (19%)
fn3 668..744 CDD:365830 19/88 (22%)
FN3 762..850 CDD:238020 24/99 (24%)
fn3 857..934 CDD:365830 8/77 (10%)
FN3 951..1049 CDD:238020 24/110 (22%)
FN3 1056..1137 CDD:238020 21/86 (24%)
FN3 1152..1233 CDD:238020 27/93 (29%)
FN3 1247..1337 CDD:238020 21/94 (22%)
FN3 1342..1421 CDD:238020 26/181 (14%)
FN3 1432..1535 CDD:238020 12/102 (12%)
FN3 1542..1638 CDD:238020 15/95 (16%)
FN3 1645..1734 CDD:238020 19/101 (19%)
UP_III_II 1759..1928 CDD:297589 1/3 (33%)
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46957
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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