DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment et and Ptprq

DIOPT Version :9

Sequence 1:NP_001245761.1 Gene:et / 32975 FlyBaseID:FBgn0031055 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:453 Identity:86/453 - (18%)
Similarity:168/453 - (37%) Gaps:96/453 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 LLNLKDFVCRDVVYYLRCTFSRME--NGNFENKTHYQLAMGRAKPIDCRKSEDE----------R 170
            ::|.|:.....::.|    :...|  ||...:.|.|.:.:...:.......::.          |
Mouse   575 IINYKNISSSSILLY----WDPPEYPNGKITHYTIYAMELDTNRAFQMTTVDNSFLITGLKKYTR 635

  Fly   171 SRGKVECSVPIDPNSRAPEWRDFRLIMSDDLGNQSKVLRLTQAEMEVLEWPRGKHNMIQTPNQTC 235
            .:.:|..|..:..:|.:.|...|.....|:..:..:.:::|..                :|::..
Mouse   636 YKMRVAASTHVGESSLSEENDLFVRTPEDEPESSPQDVKVTDV----------------SPSELS 684

  Fly   236 LEWNGP-----FIYPNRTFELNVQFRHSKLPNLS-RNLTVSQMRAVSVFDQVCFGNPPEGNQLFY 294
            |.|:.|     .|.....|..|......|  |.| .|:|:|.::..::::            :..
Mouse   685 LTWSPPEKPNGIIIAYEVFYQNADALFVK--NTSTTNITLSDLKPYTLYN------------ISI 735

  Fly   295 VSLSRRLHGSPWSERYPEFELTTNASLPARPPRFLANGFSHDRAKRELKVYWLPLDELEFNGAEQ 359
            .|.:|..||:..|..   ..:.|:.::|...|.   |....:.:..|:::::||  ....||..|
Mouse   736 QSYTRLGHGNQSSSL---LSVRTSETVPDSAPE---NITYKNISSEEIEIFFLP--PRSPNGIIQ 792

  Fly   360 TYV----------ASTRYGTKVATTQGSMLAIFTDWDDTQPATVSVWSSNVVGRSLESSQLEVPR 414
            .|.          |.|...|.:..|.|. |..:|.:      .:.|.:|.:.|..:.|..:.:..
Mouse   793 KYTIYLKRSNSHEARTIETTSLTLTIGG-LKKYTHY------VIEVSASTLKGEGVRSMPISILT 850

  Fly   415 LSDIRD---RRIYLESYNKTSSRLSWQGP-EELGNFTGYIVY-WCKLSSKVHDACDDSSSIETT- 473
            ..|..|   :...::..:..:..||||.| |..|....|.|| |.|:|.|..:|.:.|..:... 
Mouse   851 EEDAPDSPPQNFSVKQLSGVTVMLSWQPPLEPNGIILYYTVYVWDKVSLKTINATEVSLELSDLD 915

  Fly   474 -YARETAYNFSGIQGVIRMAVAANYSDGLTTG--MRWWSGDSEVPEKPKILRYVEGTIALLVL 533
             :|..:||          :..:..:.||.|..  :.:.:.:.|..:.||.:.||..:.:.::|
Mouse   916 YHADYSAY----------VTASTRFGDGKTRSSVINFRTPEGEPSDPPKDVHYVNLSSSSIIL 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
etNP_001245761.1 None
PtprqNP_001357916.1 FN3 57..151 CDD:238020
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830
FN3 570..654 CDD:238020 12/82 (15%)
fn3 668..744 CDD:365830 16/105 (15%)
FN3 762..850 CDD:238020 20/99 (20%)
fn3 857..934 CDD:365830 20/86 (23%)
FN3 951..1049 CDD:238020 5/18 (28%)
FN3 1056..1137 CDD:238020
FN3 1152..1233 CDD:238020
FN3 1247..1337 CDD:238020
FN3 1342..1421 CDD:238020
FN3 1432..1535 CDD:238020
FN3 1542..1638 CDD:238020
FN3 1645..1734 CDD:238020
UP_III_II 1759..1928 CDD:297589
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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